Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC13.72□□□□□ -0.21
NKX2-1P43699 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NKX2-1P43699 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
NKX2-1P43699 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC13.72□□□□□ -0.21
NKX2-1P43699 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC13.72□□□□□ -0.21
NKX2-1P43699 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
NKX2-1P43699 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC13.72□□□□□ -0.21
NKX2-1P43699 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
NKX2-1P43699 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
NKX2-1P43699 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NKX2-1P43699 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NKX2-1P43699 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
NKX2-1P43699 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NKX2-1P43699 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NKX2-1P43699 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC13.71□□□□□ -0.21
NKX2-1P43699 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
NKX2-1P43699 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
NKX2-1P43699 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC13.71□□□□□ -0.21
NKX2-1P43699 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NKX2-1P43699 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.21
NKX2-1P43699 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NKX2-1P43699 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NKX2-1P43699 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
NKX2-1P43699 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC13.71□□□□□ -0.21
NKX2-1P43699 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NKX2-1P43699 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
NKX2-1P43699 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC13.71□□□□□ -0.21
NKX2-1P43699 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
NKX2-1P43699 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
NKX2-1P43699 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NKX2-1P43699 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NKX2-1P43699 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
NKX2-1P43699 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC13.71□□□□□ -0.21
NKX2-1P43699 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NKX2-1P43699 KLF4P1-201ENST00000412782 1185 ntBASIC13.71□□□□□ -0.21
NKX2-1P43699 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC13.71□□□□□ -0.21
NKX2-1P43699 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC13.71□□□□□ -0.21
NKX2-1P43699 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
NKX2-1P43699 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC13.71□□□□□ -0.21
NKX2-1P43699 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC13.71□□□□□ -0.21
NKX2-1P43699 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC13.71□□□□□ -0.21
NKX2-1P43699 AL139011.1-202ENST00000642063 584 ntBASIC13.71□□□□□ -0.21
NKX2-1P43699 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
NKX2-1P43699 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NKX2-1P43699 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NKX2-1P43699 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NKX2-1P43699 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
NKX2-1P43699 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.22
NKX2-1P43699 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC13.71□□□□□ -0.22
NKX2-1P43699 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
NKX2-1P43699 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
NKX2-1P43699 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC13.7□□□□□ -0.22
NKX2-1P43699 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX2-1P43699 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC13.7□□□□□ -0.22
NKX2-1P43699 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX2-1P43699 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX2-1P43699 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX2-1P43699 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC13.7□□□□□ -0.22
NKX2-1P43699 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX2-1P43699 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC13.7□□□□□ -0.22
NKX2-1P43699 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX2-1P43699 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX2-1P43699 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
NKX2-1P43699 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX2-1P43699 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX2-1P43699 SP100-205ENST00000409824 1802 ntTSL 5 BASIC13.7□□□□□ -0.22
NKX2-1P43699 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX2-1P43699 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX2-1P43699 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
NKX2-1P43699 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX2-1P43699 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
NKX2-1P43699 LIN28AP1-201ENST00000429574 405 ntBASIC13.7□□□□□ -0.22
NKX2-1P43699 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
NKX2-1P43699 SLC25A3P1-201ENST00000443844 931 ntBASIC13.7□□□□□ -0.22
NKX2-1P43699 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
NKX2-1P43699 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC13.7□□□□□ -0.22
NKX2-1P43699 AL441883.1-201ENST00000566170 1045 ntBASIC13.7□□□□□ -0.22
NKX2-1P43699 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC13.7□□□□□ -0.22
NKX2-1P43699 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX2-1P43699 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX2-1P43699 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC13.7□□□□□ -0.22
NKX2-1P43699 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX2-1P43699 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
NKX2-1P43699 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX2-1P43699 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX2-1P43699 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX2-1P43699 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC13.7□□□□□ -0.22
NKX2-1P43699 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX2-1P43699 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
NKX2-1P43699 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX2-1P43699 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX2-1P43699 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
NKX2-1P43699 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX2-1P43699 GGT4P-201ENST00000623672 1708 ntBASIC13.7□□□□□ -0.22
NKX2-1P43699 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX2-1P43699 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC13.7□□□□□ -0.22
NKX2-1P43699 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
NKX2-1P43699 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
NKX2-1P43699 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX2-1P43699 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms