Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL9A1P20849 U1.21-201ENST00000580816 167 ntBASIC17■□□□□ 0.31
COL9A1P20849 AL031055.1-201ENST00000606362 631 ntBASIC17■□□□□ 0.31
COL9A1P20849 AP000240.1-201ENST00000609910 452 ntBASIC17■□□□□ 0.31
COL9A1P20849 WT1-AS_2.1-201ENST00000613208 137 ntBASIC17■□□□□ 0.31
COL9A1P20849 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC17■□□□□ 0.31
COL9A1P20849 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL9A1P20849 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL9A1P20849 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
COL9A1P20849 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
COL9A1P20849 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL9A1P20849 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL9A1P20849 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17■□□□□ 0.31
COL9A1P20849 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC16.99■□□□□ 0.31
COL9A1P20849 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.99■□□□□ 0.31
COL9A1P20849 CETN4P-206ENST00000642099 2168 ntBASIC16.99■□□□□ 0.31
COL9A1P20849 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL9A1P20849 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC16.99■□□□□ 0.31
COL9A1P20849 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL9A1P20849 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.99■□□□□ 0.31
COL9A1P20849 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL9A1P20849 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL9A1P20849 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
COL9A1P20849 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC16.99■□□□□ 0.31
COL9A1P20849 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL9A1P20849 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL9A1P20849 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL9A1P20849 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL9A1P20849 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL9A1P20849 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC16.99■□□□□ 0.31
COL9A1P20849 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL9A1P20849 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL9A1P20849 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.99■□□□□ 0.31
COL9A1P20849 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.99■□□□□ 0.31
COL9A1P20849 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.99■□□□□ 0.31
COL9A1P20849 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
COL9A1P20849 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC16.99■□□□□ 0.31
COL9A1P20849 OR13I1P-201ENST00000609811 1264 ntBASIC16.99■□□□□ 0.31
COL9A1P20849 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
COL9A1P20849 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC16.99■□□□□ 0.31
COL9A1P20849 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
COL9A1P20849 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL9A1P20849 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC16.99■□□□□ 0.31
COL9A1P20849 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL9A1P20849 TOP3BP1-201ENST00000420768 1380 ntBASIC16.99■□□□□ 0.31
COL9A1P20849 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.99■□□□□ 0.31
COL9A1P20849 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL9A1P20849 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL9A1P20849 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC16.99■□□□□ 0.31
COL9A1P20849 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL9A1P20849 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL9A1P20849 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL9A1P20849 AC093525.9-201ENST00000624961 1746 ntBASIC16.99■□□□□ 0.31
COL9A1P20849 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL9A1P20849 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
COL9A1P20849 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL9A1P20849 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.98■□□□□ 0.31
COL9A1P20849 WASH6P-202ENST00000359512 1437 ntBASIC16.98■□□□□ 0.31
COL9A1P20849 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL9A1P20849 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL9A1P20849 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.98■□□□□ 0.31
COL9A1P20849 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL9A1P20849 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC16.98■□□□□ 0.31
COL9A1P20849 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL9A1P20849 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL9A1P20849 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
COL9A1P20849 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC16.98■□□□□ 0.31
COL9A1P20849 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
COL9A1P20849 WFDC1-204ENST00000613603 549 ntBASIC16.98■□□□□ 0.31
COL9A1P20849 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC16.98■□□□□ 0.31
COL9A1P20849 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
COL9A1P20849 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC16.98■□□□□ 0.31
COL9A1P20849 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
COL9A1P20849 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL9A1P20849 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC16.98■□□□□ 0.31
COL9A1P20849 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
COL9A1P20849 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL9A1P20849 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.98■□□□□ 0.31
COL9A1P20849 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC16.98■□□□□ 0.31
COL9A1P20849 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL9A1P20849 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.98■□□□□ 0.31
COL9A1P20849 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
COL9A1P20849 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC16.98■□□□□ 0.31
COL9A1P20849 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC16.97■□□□□ 0.31
COL9A1P20849 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
COL9A1P20849 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
COL9A1P20849 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL9A1P20849 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
COL9A1P20849 AL390961.4-201ENST00000623958 2535 ntBASIC16.97■□□□□ 0.31
COL9A1P20849 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC16.97■□□□□ 0.31
COL9A1P20849 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL9A1P20849 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL9A1P20849 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC16.97■□□□□ 0.31
COL9A1P20849 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL9A1P20849 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL9A1P20849 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC16.97■□□□□ 0.31
COL9A1P20849 RPL37AP1-201ENST00000412502 279 ntBASIC16.97■□□□□ 0.31
COL9A1P20849 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC16.97■□□□□ 0.31
COL9A1P20849 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC16.97■□□□□ 0.31
COL9A1P20849 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms