Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.61■□□□□ 0.25
MSH3P20585 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSH3P20585 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
MSH3P20585 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSH3P20585 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSH3P20585 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.61■□□□□ 0.25
MSH3P20585 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
MSH3P20585 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
MSH3P20585 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.61■□□□□ 0.25
MSH3P20585 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
MSH3P20585 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.61■□□□□ 0.25
MSH3P20585 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSH3P20585 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
MSH3P20585 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSH3P20585 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSH3P20585 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
MSH3P20585 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.61■□□□□ 0.25
MSH3P20585 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSH3P20585 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
MSH3P20585 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
MSH3P20585 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
MSH3P20585 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
MSH3P20585 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSH3P20585 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
MSH3P20585 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.6■□□□□ 0.25
MSH3P20585 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSH3P20585 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSH3P20585 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSH3P20585 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSH3P20585 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSH3P20585 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSH3P20585 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.6■□□□□ 0.25
MSH3P20585 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC16.6■□□□□ 0.25
MSH3P20585 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC16.6■□□□□ 0.25
MSH3P20585 NMU-203ENST00000507338 658 ntTSL 3 BASIC16.6■□□□□ 0.25
MSH3P20585 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC16.6■□□□□ 0.25
MSH3P20585 AC002347.1-201ENST00000569543 541 ntBASIC16.6■□□□□ 0.25
MSH3P20585 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC16.6■□□□□ 0.25
MSH3P20585 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC16.6■□□□□ 0.25
MSH3P20585 AL513190.1-201ENST00000621254 727 ntBASIC16.6■□□□□ 0.25
MSH3P20585 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSH3P20585 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.6■□□□□ 0.25
MSH3P20585 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSH3P20585 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSH3P20585 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.6■□□□□ 0.25
MSH3P20585 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSH3P20585 AC078925.2-201ENST00000624013 1973 ntBASIC16.6■□□□□ 0.25
MSH3P20585 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSH3P20585 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
MSH3P20585 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
MSH3P20585 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
MSH3P20585 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSH3P20585 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSH3P20585 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSH3P20585 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSH3P20585 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSH3P20585 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSH3P20585 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSH3P20585 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MSH3P20585 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
MSH3P20585 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.59■□□□□ 0.25
MSH3P20585 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MSH3P20585 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MSH3P20585 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSH3P20585 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSH3P20585 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.59■□□□□ 0.25
MSH3P20585 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSH3P20585 AC074386.1-202ENST00000463561 864 ntBASIC16.59■□□□□ 0.25
MSH3P20585 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.59■□□□□ 0.25
MSH3P20585 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC16.59■□□□□ 0.25
MSH3P20585 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC16.59■□□□□ 0.25
MSH3P20585 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC16.59■□□□□ 0.25
MSH3P20585 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC16.59■□□□□ 0.25
MSH3P20585 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.59■□□□□ 0.25
MSH3P20585 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC16.59■□□□□ 0.25
MSH3P20585 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC16.59■□□□□ 0.25
MSH3P20585 RPL28-209ENST00000560055 670 ntTSL 3 BASIC16.59■□□□□ 0.25
MSH3P20585 PDPK2P-202ENST00000562415 1191 ntBASIC16.59■□□□□ 0.25
MSH3P20585 AC092865.6-201ENST00000642101 219 ntBASIC16.59■□□□□ 0.25
MSH3P20585 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.59■□□□□ 0.25
MSH3P20585 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSH3P20585 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.59■□□□□ 0.25
MSH3P20585 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSH3P20585 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSH3P20585 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
MSH3P20585 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
MSH3P20585 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC16.59■□□□□ 0.25
MSH3P20585 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.59■□□□□ 0.25
MSH3P20585 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSH3P20585 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
MSH3P20585 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MSH3P20585 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.59■□□□□ 0.25
MSH3P20585 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
MSH3P20585 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
MSH3P20585 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
MSH3P20585 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.58■□□□□ 0.25
MSH3P20585 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.58■□□□□ 0.25
MSH3P20585 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
MSH3P20585 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
MSH3P20585 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms