Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC3P19447 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC3P19447 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
ERCC3P19447 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC3P19447 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC19.28■□□□□ 0.68
ERCC3P19447 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC3P19447 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC3P19447 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC3P19447 SLC25A1P3-201ENST00000395415 828 ntBASIC19.28■□□□□ 0.68
ERCC3P19447 AC002472.2-201ENST00000442739 958 ntBASIC19.28■□□□□ 0.68
ERCC3P19447 TSPY16P-201ENST00000449843 468 ntBASIC19.28■□□□□ 0.68
ERCC3P19447 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC19.28■□□□□ 0.68
ERCC3P19447 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC19.28■□□□□ 0.68
ERCC3P19447 ALG1L8P-201ENST00000533887 760 ntBASIC19.28■□□□□ 0.68
ERCC3P19447 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC19.28■□□□□ 0.68
ERCC3P19447 AC190387.1-201ENST00000551683 408 ntBASIC19.28■□□□□ 0.68
ERCC3P19447 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC3P19447 MIR3909-201ENST00000579518 119 ntBASIC19.28■□□□□ 0.68
ERCC3P19447 RN7SL204P-201ENST00000582831 262 ntBASIC19.28■□□□□ 0.68
ERCC3P19447 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC19.28■□□□□ 0.68
ERCC3P19447 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC19.28■□□□□ 0.68
ERCC3P19447 MIR6080-201ENST00000617359 66 ntBASIC19.28■□□□□ 0.68
ERCC3P19447 AL390754.1-201ENST00000619088 582 ntBASIC19.28■□□□□ 0.68
ERCC3P19447 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
ERCC3P19447 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC19.28■□□□□ 0.68
ERCC3P19447 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC3P19447 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC3P19447 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC3P19447 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC3P19447 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
ERCC3P19447 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC3P19447 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC3P19447 AC093525.9-201ENST00000624961 1746 ntBASIC19.28■□□□□ 0.68
ERCC3P19447 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC19.28■□□□□ 0.68
ERCC3P19447 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC19.28■□□□□ 0.68
ERCC3P19447 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC3P19447 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC3P19447 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC19.28■□□□□ 0.68
ERCC3P19447 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC19.27■□□□□ 0.68
ERCC3P19447 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
ERCC3P19447 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ERCC3P19447 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.68
ERCC3P19447 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ERCC3P19447 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ERCC3P19447 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC19.27■□□□□ 0.68
ERCC3P19447 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
ERCC3P19447 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC19.27■□□□□ 0.68
ERCC3P19447 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ERCC3P19447 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ERCC3P19447 MIR346-201ENST00000362234 95 ntBASIC19.27■□□□□ 0.68
ERCC3P19447 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
ERCC3P19447 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC19.27■□□□□ 0.68
ERCC3P19447 HNRNPA1P40-201ENST00000426371 1278 ntBASIC19.27■□□□□ 0.68
ERCC3P19447 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC19.27■□□□□ 0.68
ERCC3P19447 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC19.27■□□□□ 0.68
ERCC3P19447 IGHV3-42-201ENST00000520410 361 ntBASIC19.27■□□□□ 0.68
ERCC3P19447 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC19.27■□□□□ 0.68
ERCC3P19447 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC19.27■□□□□ 0.68
ERCC3P19447 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
ERCC3P19447 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC19.27■□□□□ 0.68
ERCC3P19447 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
ERCC3P19447 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
ERCC3P19447 AC009053.2-201ENST00000563701 2365 ntBASIC19.27■□□□□ 0.67
ERCC3P19447 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC19.27■□□□□ 0.67
ERCC3P19447 AL138688.1-201ENST00000624851 1594 ntBASIC19.27■□□□□ 0.67
ERCC3P19447 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
ERCC3P19447 AC016027.1-202ENST00000607927 1699 ntBASIC19.27■□□□□ 0.67
ERCC3P19447 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
ERCC3P19447 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
ERCC3P19447 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ERCC3P19447 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
ERCC3P19447 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
ERCC3P19447 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ERCC3P19447 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC19.26■□□□□ 0.67
ERCC3P19447 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ERCC3P19447 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC19.26■□□□□ 0.67
ERCC3P19447 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ERCC3P19447 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ERCC3P19447 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
ERCC3P19447 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ERCC3P19447 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ERCC3P19447 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC19.26■□□□□ 0.67
ERCC3P19447 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC19.26■□□□□ 0.67
ERCC3P19447 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ERCC3P19447 WBP2-203ENST00000433525 928 ntTSL 2 BASIC19.26■□□□□ 0.67
ERCC3P19447 PPP6R2P1-201ENST00000450880 1275 ntBASIC19.26■□□□□ 0.67
ERCC3P19447 OARD1-208ENST00000469104 704 ntTSL 2 BASIC19.26■□□□□ 0.67
ERCC3P19447 MPDU1-223ENST00000582151 728 ntBASIC19.26■□□□□ 0.67
ERCC3P19447 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC19.26■□□□□ 0.67
ERCC3P19447 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC19.26■□□□□ 0.67
ERCC3P19447 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ERCC3P19447 FOS-208ENST00000555686 1496 ntTSL 2 BASIC19.26■□□□□ 0.67
ERCC3P19447 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ERCC3P19447 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ERCC3P19447 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
ERCC3P19447 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ERCC3P19447 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ERCC3P19447 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ERCC3P19447 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ERCC3P19447 AC131009.4-201ENST00000624048 1740 ntBASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms