Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HMGB1P09429 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC19.64■□□□□ 0.73
HMGB1P09429 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC19.64■□□□□ 0.73
HMGB1P09429 AC005052.1-201ENST00000625181 2492 ntBASIC19.64■□□□□ 0.73
HMGB1P09429 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC19.64■□□□□ 0.73
HMGB1P09429 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HMGB1P09429 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC19.64■□□□□ 0.73
HMGB1P09429 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC19.64■□□□□ 0.73
HMGB1P09429 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGB1P09429 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGB1P09429 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGB1P09429 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGB1P09429 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
HMGB1P09429 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC19.63■□□□□ 0.73
HMGB1P09429 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGB1P09429 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
HMGB1P09429 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGB1P09429 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC19.63■□□□□ 0.73
HMGB1P09429 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGB1P09429 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGB1P09429 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGB1P09429 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGB1P09429 FIS1-203ENST00000442303 631 ntTSL 3 BASIC19.63■□□□□ 0.73
HMGB1P09429 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC19.63■□□□□ 0.73
HMGB1P09429 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC19.63■□□□□ 0.73
HMGB1P09429 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC19.63■□□□□ 0.73
HMGB1P09429 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC19.63■□□□□ 0.73
HMGB1P09429 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC19.63■□□□□ 0.73
HMGB1P09429 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC19.63■□□□□ 0.73
HMGB1P09429 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGB1P09429 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC19.63■□□□□ 0.73
HMGB1P09429 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
HMGB1P09429 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
HMGB1P09429 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC19.63■□□□□ 0.73
HMGB1P09429 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC19.62■□□□□ 0.73
HMGB1P09429 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
HMGB1P09429 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HMGB1P09429 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HMGB1P09429 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HMGB1P09429 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGB1P09429 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGB1P09429 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGB1P09429 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGB1P09429 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGB1P09429 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC19.62■□□□□ 0.73
HMGB1P09429 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGB1P09429 BEX3-201ENST00000361298 921 ntTSL 2 BASIC19.62■□□□□ 0.73
HMGB1P09429 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC19.62■□□□□ 0.73
HMGB1P09429 AC026396.1-201ENST00000419388 421 ntBASIC19.62■□□□□ 0.73
HMGB1P09429 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC19.62■□□□□ 0.73
HMGB1P09429 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HMGB1P09429 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC19.62■□□□□ 0.73
HMGB1P09429 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGB1P09429 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGB1P09429 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGB1P09429 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC19.62■□□□□ 0.73
HMGB1P09429 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGB1P09429 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
HMGB1P09429 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGB1P09429 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGB1P09429 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC19.62■□□□□ 0.73
HMGB1P09429 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
HMGB1P09429 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGB1P09429 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGB1P09429 AL662844.4-201ENST00000606367 2838 ntBASIC19.61■□□□□ 0.73
HMGB1P09429 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGB1P09429 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC19.61■□□□□ 0.73
HMGB1P09429 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC19.61■□□□□ 0.73
HMGB1P09429 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC19.61■□□□□ 0.73
HMGB1P09429 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGB1P09429 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HMGB1P09429 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGB1P09429 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC19.61■□□□□ 0.73
HMGB1P09429 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC19.61■□□□□ 0.73
HMGB1P09429 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
HMGB1P09429 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGB1P09429 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGB1P09429 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
HMGB1P09429 AL591424.1-201ENST00000442569 1213 ntBASIC19.61■□□□□ 0.73
HMGB1P09429 NMU-203ENST00000507338 658 ntTSL 3 BASIC19.61■□□□□ 0.73
HMGB1P09429 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC19.61■□□□□ 0.73
HMGB1P09429 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC19.61■□□□□ 0.73
HMGB1P09429 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC19.61■□□□□ 0.73
HMGB1P09429 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC19.61■□□□□ 0.73
HMGB1P09429 MED16-214ENST00000617672 554 ntTSL 5 BASIC19.61■□□□□ 0.73
HMGB1P09429 AC004877.2-201ENST00000623941 599 ntBASIC19.61■□□□□ 0.73
HMGB1P09429 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGB1P09429 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
HMGB1P09429 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGB1P09429 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC19.61■□□□□ 0.73
HMGB1P09429 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HMGB1P09429 DOC2GP-204ENST00000639052 2548 ntBASIC19.61■□□□□ 0.73
HMGB1P09429 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
HMGB1P09429 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
HMGB1P09429 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HMGB1P09429 AC092364.2-201ENST00000596710 2692 ntBASIC19.6■□□□□ 0.73
HMGB1P09429 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC19.6■□□□□ 0.73
HMGB1P09429 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
HMGB1P09429 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC19.6■□□□□ 0.73
HMGB1P09429 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms