Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
CD74P04233 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CD74P04233 AC148477.5-201ENST00000625164 1645 ntBASIC14.04□□□□□ -0.16
CD74P04233 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CD74P04233 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
CD74P04233 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC14.04□□□□□ -0.16
CD74P04233 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC14.04□□□□□ -0.16
CD74P04233 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
CD74P04233 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CD74P04233 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CD74P04233 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
CD74P04233 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CD74P04233 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CD74P04233 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CD74P04233 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CD74P04233 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CD74P04233 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CD74P04233 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CD74P04233 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CD74P04233 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
CD74P04233 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC14.04□□□□□ -0.16
CD74P04233 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC14.04□□□□□ -0.16
CD74P04233 YBX1P2-201ENST00000489612 999 ntBASIC14.04□□□□□ -0.16
CD74P04233 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CD74P04233 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC14.04□□□□□ -0.16
CD74P04233 DUT-205ENST00000558813 769 ntTSL 2 BASIC14.04□□□□□ -0.16
CD74P04233 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC14.04□□□□□ -0.16
CD74P04233 ABBA01031661.1-201ENST00000634362 1253 ntBASIC14.04□□□□□ -0.16
CD74P04233 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CD74P04233 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CD74P04233 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CD74P04233 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CD74P04233 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
CD74P04233 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CD74P04233 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC14.04□□□□□ -0.16
CD74P04233 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
CD74P04233 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CD74P04233 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC14.04□□□□□ -0.16
CD74P04233 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CD74P04233 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CD74P04233 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CD74P04233 PMPCAP1-201ENST00000508114 1576 ntBASIC14.04□□□□□ -0.16
CD74P04233 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CD74P04233 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC14.04□□□□□ -0.16
CD74P04233 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CD74P04233 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CD74P04233 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CD74P04233 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC14.04□□□□□ -0.16
CD74P04233 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CD74P04233 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CD74P04233 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CD74P04233 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CD74P04233 LCK-206ENST00000373564 2137 ntTSL 5 BASIC14.03□□□□□ -0.16
CD74P04233 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
CD74P04233 CASK-202ENST00000378158 3848 ntTSL 5 BASIC14.03□□□□□ -0.16
CD74P04233 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CD74P04233 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CD74P04233 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CD74P04233 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC14.03□□□□□ -0.16
CD74P04233 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CD74P04233 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CD74P04233 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CD74P04233 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CD74P04233 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CD74P04233 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CD74P04233 MIR648-201ENST00000385046 94 ntBASIC14.03□□□□□ -0.16
CD74P04233 AL020989.1-201ENST00000422979 469 ntBASIC14.03□□□□□ -0.16
CD74P04233 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CD74P04233 AC246785.2-201ENST00000432512 513 ntBASIC14.03□□□□□ -0.16
CD74P04233 KRT18P38-201ENST00000449496 1282 ntBASIC14.03□□□□□ -0.16
CD74P04233 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC14.03□□□□□ -0.16
CD74P04233 MIR4497-201ENST00000583208 89 ntBASIC14.03□□□□□ -0.16
CD74P04233 AC145285.6-201ENST00000604632 637 ntBASIC14.03□□□□□ -0.16
CD74P04233 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CD74P04233 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC14.03□□□□□ -0.16
CD74P04233 TOP3BP1-201ENST00000420768 1380 ntBASIC14.03□□□□□ -0.16
CD74P04233 AC243591.1-201ENST00000452967 1364 ntBASIC14.03□□□□□ -0.16
CD74P04233 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CD74P04233 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CD74P04233 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CD74P04233 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
CD74P04233 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CD74P04233 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC14.03□□□□□ -0.16
CD74P04233 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CD74P04233 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CD74P04233 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC14.03□□□□□ -0.16
CD74P04233 PCGF3-213ENST00000620529 1899 ntBASIC14.03□□□□□ -0.16
CD74P04233 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CD74P04233 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC14.03□□□□□ -0.16
CD74P04233 TCAF2P1-201ENST00000291129 2421 ntBASIC14.03□□□□□ -0.16
CD74P04233 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CD74P04233 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CD74P04233 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CD74P04233 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CD74P04233 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CD74P04233 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CD74P04233 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CD74P04233 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.02□□□□□ -0.16
CD74P04233 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC14.02□□□□□ -0.16
CD74P04233 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms