Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC16.26■□□□□ 0.19
SDC3O75056 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SDC3O75056 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SDC3O75056 AC004890.2-204ENST00000481968 304 ntBASIC16.26■□□□□ 0.19
SDC3O75056 SERBP1P5-201ENST00000510079 1181 ntBASIC16.26■□□□□ 0.19
SDC3O75056 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC16.26■□□□□ 0.19
SDC3O75056 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC16.26■□□□□ 0.19
SDC3O75056 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.26■□□□□ 0.19
SDC3O75056 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.26■□□□□ 0.19
SDC3O75056 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SDC3O75056 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
SDC3O75056 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.26■□□□□ 0.19
SDC3O75056 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.26■□□□□ 0.19
SDC3O75056 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SDC3O75056 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SDC3O75056 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SDC3O75056 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC16.26■□□□□ 0.19
SDC3O75056 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
SDC3O75056 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SDC3O75056 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SDC3O75056 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
SDC3O75056 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
SDC3O75056 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SDC3O75056 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDC3O75056 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDC3O75056 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDC3O75056 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDC3O75056 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SDC3O75056 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDC3O75056 LINC02012-201ENST00000608206 1725 ntBASIC16.25■□□□□ 0.19
SDC3O75056 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
SDC3O75056 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
SDC3O75056 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDC3O75056 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDC3O75056 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.25■□□□□ 0.19
SDC3O75056 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDC3O75056 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SDC3O75056 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDC3O75056 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDC3O75056 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDC3O75056 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDC3O75056 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDC3O75056 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDC3O75056 METTL26-204ENST00000397665 558 ntTSL 2 BASIC16.25■□□□□ 0.19
SDC3O75056 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.25■□□□□ 0.19
SDC3O75056 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.25■□□□□ 0.19
SDC3O75056 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC16.25■□□□□ 0.19
SDC3O75056 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.25■□□□□ 0.19
SDC3O75056 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC16.25■□□□□ 0.19
SDC3O75056 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.25■□□□□ 0.19
SDC3O75056 PRYP6-201ENST00000514804 343 ntBASIC16.25■□□□□ 0.19
SDC3O75056 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
SDC3O75056 COQ4-205ENST00000609948 956 ntTSL 2 BASIC16.25■□□□□ 0.19
SDC3O75056 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDC3O75056 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.25■□□□□ 0.19
SDC3O75056 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
SDC3O75056 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SDC3O75056 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SDC3O75056 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDC3O75056 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDC3O75056 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDC3O75056 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDC3O75056 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC16.25■□□□□ 0.19
SDC3O75056 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
SDC3O75056 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC16.25■□□□□ 0.19
SDC3O75056 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
SDC3O75056 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC16.25■□□□□ 0.19
SDC3O75056 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDC3O75056 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.25■□□□□ 0.19
SDC3O75056 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SDC3O75056 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
SDC3O75056 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SDC3O75056 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.24■□□□□ 0.19
SDC3O75056 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
SDC3O75056 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SDC3O75056 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SDC3O75056 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SDC3O75056 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SDC3O75056 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
SDC3O75056 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SDC3O75056 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SDC3O75056 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SDC3O75056 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.24■□□□□ 0.19
SDC3O75056 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC16.24■□□□□ 0.19
SDC3O75056 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC16.24■□□□□ 0.19
SDC3O75056 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
SDC3O75056 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SDC3O75056 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SDC3O75056 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.24■□□□□ 0.19
SDC3O75056 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SDC3O75056 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC16.24■□□□□ 0.19
SDC3O75056 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
SDC3O75056 AC005225.4-201ENST00000557330 545 ntBASIC16.24■□□□□ 0.19
SDC3O75056 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.24■□□□□ 0.19
SDC3O75056 AL590560.3-201ENST00000623350 461 ntBASIC16.24■□□□□ 0.19
SDC3O75056 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SDC3O75056 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
SDC3O75056 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.24■□□□□ 0.19
SDC3O75056 AC092068.3-201ENST00000587894 2016 ntBASIC16.24■□□□□ 0.19
SDC3O75056 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms