Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 ALOX12P2-203ENST00000570921 1945 ntBASIC17.77■□□□□ 0.44
SIX4Q9UIU6 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SIX4Q9UIU6 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC17.77■□□□□ 0.44
SIX4Q9UIU6 MIR346-201ENST00000362234 95 ntBASIC17.77■□□□□ 0.44
SIX4Q9UIU6 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
SIX4Q9UIU6 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
SIX4Q9UIU6 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SIX4Q9UIU6 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC17.77■□□□□ 0.44
SIX4Q9UIU6 AC073389.1-201ENST00000595595 795 ntBASIC17.77■□□□□ 0.44
SIX4Q9UIU6 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC17.77■□□□□ 0.44
SIX4Q9UIU6 AC020765.3-201ENST00000613051 740 ntBASIC17.77■□□□□ 0.44
SIX4Q9UIU6 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC17.77■□□□□ 0.44
SIX4Q9UIU6 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SIX4Q9UIU6 PCGF3-213ENST00000620529 1899 ntBASIC17.77■□□□□ 0.43
SIX4Q9UIU6 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC17.77■□□□□ 0.43
SIX4Q9UIU6 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SIX4Q9UIU6 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
SIX4Q9UIU6 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
SIX4Q9UIU6 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
SIX4Q9UIU6 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.77■□□□□ 0.43
SIX4Q9UIU6 GOLGA6L17P-202ENST00000614358 1398 ntBASIC17.77■□□□□ 0.43
SIX4Q9UIU6 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC17.77■□□□□ 0.43
SIX4Q9UIU6 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC17.77■□□□□ 0.43
SIX4Q9UIU6 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.77■□□□□ 0.43
SIX4Q9UIU6 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
SIX4Q9UIU6 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SIX4Q9UIU6 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
SIX4Q9UIU6 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
SIX4Q9UIU6 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 AC005052.1-201ENST00000625181 2492 ntBASIC17.76■□□□□ 0.43
SIX4Q9UIU6 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 CBR1-202ENST00000399191 838 ntTSL 3 BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 VMO1-203ENST00000416307 712 ntTSL 2 BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 AC092183.1-201ENST00000469884 875 ntBASIC17.76■□□□□ 0.43
SIX4Q9UIU6 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 AP000842.3-202ENST00000569238 1080 ntBASIC17.76■□□□□ 0.43
SIX4Q9UIU6 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 NKG7-205ENST00000600427 520 ntTSL 3 BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
SIX4Q9UIU6 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
SIX4Q9UIU6 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.75■□□□□ 0.43
SIX4Q9UIU6 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.75■□□□□ 0.43
SIX4Q9UIU6 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC17.75■□□□□ 0.43
SIX4Q9UIU6 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.75■□□□□ 0.43
SIX4Q9UIU6 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
SIX4Q9UIU6 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.75■□□□□ 0.43
SIX4Q9UIU6 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SIX4Q9UIU6 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
SIX4Q9UIU6 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SIX4Q9UIU6 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.75■□□□□ 0.43
SIX4Q9UIU6 AL139400.1-201ENST00000366220 510 ntBASIC17.75■□□□□ 0.43
SIX4Q9UIU6 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC17.75■□□□□ 0.43
SIX4Q9UIU6 PTMS-202ENST00000389462 773 ntTSL 2 BASIC17.75■□□□□ 0.43
SIX4Q9UIU6 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC17.75■□□□□ 0.43
SIX4Q9UIU6 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC17.75■□□□□ 0.43
SIX4Q9UIU6 AC142381.1-201ENST00000426099 345 ntBASIC17.75■□□□□ 0.43
SIX4Q9UIU6 GPS2P2-201ENST00000430745 888 ntBASIC17.75■□□□□ 0.43
SIX4Q9UIU6 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC17.75■□□□□ 0.43
SIX4Q9UIU6 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC17.75■□□□□ 0.43
SIX4Q9UIU6 AC005237.2-201ENST00000434368 219 ntBASIC17.75■□□□□ 0.43
SIX4Q9UIU6 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SIX4Q9UIU6 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC17.75■□□□□ 0.43
SIX4Q9UIU6 PRYP6-201ENST00000514804 343 ntBASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms