Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 AC106795.1-205ENST00000512851 1056 ntBASIC16.48■□□□□ 0.23
MKS1Q9NXB0 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 AL139288.1-201ENST00000623748 933 ntBASIC16.48■□□□□ 0.23
MKS1Q9NXB0 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 AC016027.1-202ENST00000607927 1699 ntBASIC16.47■□□□□ 0.23
MKS1Q9NXB0 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 PNN-202ENST00000553331 656 ntTSL 3 BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 AC020765.3-201ENST00000613051 740 ntBASIC16.47■□□□□ 0.23
MKS1Q9NXB0 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 AL353732.1-201ENST00000569618 1459 ntBASIC16.47■□□□□ 0.23
MKS1Q9NXB0 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
MKS1Q9NXB0 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
MKS1Q9NXB0 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.46■□□□□ 0.23
MKS1Q9NXB0 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.46■□□□□ 0.23
MKS1Q9NXB0 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
MKS1Q9NXB0 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
MKS1Q9NXB0 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.46■□□□□ 0.23
MKS1Q9NXB0 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.46■□□□□ 0.23
MKS1Q9NXB0 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
MKS1Q9NXB0 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.46■□□□□ 0.23
MKS1Q9NXB0 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
MKS1Q9NXB0 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
MKS1Q9NXB0 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC16.46■□□□□ 0.23
MKS1Q9NXB0 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC16.46■□□□□ 0.23
MKS1Q9NXB0 PMS2P1-201ENST00000431037 1228 ntBASIC16.46■□□□□ 0.23
MKS1Q9NXB0 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
MKS1Q9NXB0 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
MKS1Q9NXB0 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.23
MKS1Q9NXB0 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.46■□□□□ 0.23
MKS1Q9NXB0 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
MKS1Q9NXB0 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
MKS1Q9NXB0 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
MKS1Q9NXB0 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.46■□□□□ 0.23
MKS1Q9NXB0 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
MKS1Q9NXB0 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.46■□□□□ 0.23
MKS1Q9NXB0 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
MKS1Q9NXB0 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.46■□□□□ 0.23
MKS1Q9NXB0 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
MKS1Q9NXB0 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.22
MKS1Q9NXB0 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
MKS1Q9NXB0 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.22
MKS1Q9NXB0 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.22
MKS1Q9NXB0 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms