Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 AC141586.5-201ENST00000624546 2050 ntBASIC17.25■□□□□ 0.35
HPS4Q9NQG7 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 MIR346-201ENST00000362234 95 ntBASIC17.25■□□□□ 0.35
HPS4Q9NQG7 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 MIR661-201ENST00000384842 89 ntBASIC17.25■□□□□ 0.35
HPS4Q9NQG7 SPDYE7P-202ENST00000420373 878 ntBASIC17.25■□□□□ 0.35
HPS4Q9NQG7 UGT1A2P-201ENST00000454886 866 ntBASIC17.25■□□□□ 0.35
HPS4Q9NQG7 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 ALG1L8P-201ENST00000533887 760 ntBASIC17.25■□□□□ 0.35
HPS4Q9NQG7 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 FRMD8P1-201ENST00000440433 1524 ntBASIC17.25■□□□□ 0.35
HPS4Q9NQG7 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC17.25■□□□□ 0.35
HPS4Q9NQG7 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 AL645608.8-201ENST00000606034 2086 ntBASIC17.24■□□□□ 0.35
HPS4Q9NQG7 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 AC116353.5-201ENST00000638148 1699 ntBASIC17.24■□□□□ 0.35
HPS4Q9NQG7 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 CD81-202ENST00000381036 880 ntTSL 3 BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 AL138918.1-201ENST00000568306 659 ntBASIC17.24■□□□□ 0.35
HPS4Q9NQG7 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 MIR6080-201ENST00000617359 66 ntBASIC17.24■□□□□ 0.35
HPS4Q9NQG7 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 PP12613-201ENST00000424958 2230 ntBASIC17.24■□□□□ 0.35
HPS4Q9NQG7 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.24■□□□□ 0.35
HPS4Q9NQG7 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
HPS4Q9NQG7 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.23■□□□□ 0.35
HPS4Q9NQG7 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.23■□□□□ 0.35
HPS4Q9NQG7 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.23■□□□□ 0.35
HPS4Q9NQG7 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HPS4Q9NQG7 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HPS4Q9NQG7 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
HPS4Q9NQG7 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HPS4Q9NQG7 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HPS4Q9NQG7 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HPS4Q9NQG7 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HPS4Q9NQG7 VMA21-202ENST00000370361 693 ntTSL 5 BASIC17.23■□□□□ 0.35
HPS4Q9NQG7 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HPS4Q9NQG7 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms