Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CHD9Q3L8U1 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHD9Q3L8U1 PCDHB17P-201ENST00000539533 2393 ntBASIC17.37■□□□□ 0.37
CHD9Q3L8U1 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHD9Q3L8U1 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHD9Q3L8U1 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHD9Q3L8U1 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC17.37■□□□□ 0.37
CHD9Q3L8U1 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC17.37■□□□□ 0.37
CHD9Q3L8U1 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.37■□□□□ 0.37
CHD9Q3L8U1 AL136982.4-201ENST00000437689 1740 ntBASIC17.37■□□□□ 0.37
CHD9Q3L8U1 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHD9Q3L8U1 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHD9Q3L8U1 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHD9Q3L8U1 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC17.36■□□□□ 0.37
CHD9Q3L8U1 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CHD9Q3L8U1 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC17.36■□□□□ 0.37
CHD9Q3L8U1 AC092053.1-201ENST00000605787 1936 ntBASIC17.36■□□□□ 0.37
CHD9Q3L8U1 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC17.36■□□□□ 0.37
CHD9Q3L8U1 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CHD9Q3L8U1 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHD9Q3L8U1 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC17.36■□□□□ 0.37
CHD9Q3L8U1 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHD9Q3L8U1 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHD9Q3L8U1 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.36■□□□□ 0.37
CHD9Q3L8U1 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHD9Q3L8U1 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
CHD9Q3L8U1 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CHD9Q3L8U1 MIR663B-201ENST00000408361 115 ntBASIC17.36■□□□□ 0.37
CHD9Q3L8U1 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CHD9Q3L8U1 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC17.36■□□□□ 0.37
CHD9Q3L8U1 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC17.36■□□□□ 0.37
CHD9Q3L8U1 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CHD9Q3L8U1 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
CHD9Q3L8U1 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.36■□□□□ 0.37
CHD9Q3L8U1 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHD9Q3L8U1 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHD9Q3L8U1 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC17.36■□□□□ 0.37
CHD9Q3L8U1 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHD9Q3L8U1 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CHD9Q3L8U1 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHD9Q3L8U1 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
CHD9Q3L8U1 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHD9Q3L8U1 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CHD9Q3L8U1 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 TIMM17BP1-201ENST00000545713 516 ntBASIC17.35■□□□□ 0.37
CHD9Q3L8U1 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 LOX-206ENST00000639739 1626 ntTSL 5 BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 AC020765.3-201ENST00000613051 740 ntBASIC17.35■□□□□ 0.37
CHD9Q3L8U1 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHD9Q3L8U1 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CHD9Q3L8U1 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHD9Q3L8U1 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC17.34■□□□□ 0.37
CHD9Q3L8U1 AC007969.1-201ENST00000433675 447 ntBASIC17.34■□□□□ 0.37
CHD9Q3L8U1 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHD9Q3L8U1 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC17.34■□□□□ 0.37
CHD9Q3L8U1 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CHD9Q3L8U1 RIT1-205ENST00000539040 919 ntTSL 2 BASIC17.34■□□□□ 0.37
CHD9Q3L8U1 RARRES2P5-201ENST00000564013 466 ntBASIC17.34■□□□□ 0.37
CHD9Q3L8U1 DUX4L45-201ENST00000566406 1057 ntBASIC17.34■□□□□ 0.37
CHD9Q3L8U1 KRT8P22-201ENST00000562317 1415 ntBASIC17.34■□□□□ 0.37
CHD9Q3L8U1 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
CHD9Q3L8U1 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CHD9Q3L8U1 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC17.34■□□□□ 0.37
CHD9Q3L8U1 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.34■□□□□ 0.37
CHD9Q3L8U1 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC17.34■□□□□ 0.37
CHD9Q3L8U1 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
CHD9Q3L8U1 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHD9Q3L8U1 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
CHD9Q3L8U1 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHD9Q3L8U1 VMO1-203ENST00000416307 712 ntTSL 2 BASIC17.34■□□□□ 0.37
CHD9Q3L8U1 AL162726.2-201ENST00000438986 1017 ntBASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms