Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
PEX3P56589 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PEX3P56589 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PEX3P56589 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PEX3P56589 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PEX3P56589 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC18.36■□□□□ 0.53
PEX3P56589 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PEX3P56589 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PEX3P56589 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
PEX3P56589 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PEX3P56589 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC18.36■□□□□ 0.53
PEX3P56589 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PEX3P56589 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC18.36■□□□□ 0.53
PEX3P56589 ADH5P3-201ENST00000433842 1137 ntBASIC18.36■□□□□ 0.53
PEX3P56589 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC18.36■□□□□ 0.53
PEX3P56589 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC18.36■□□□□ 0.53
PEX3P56589 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC18.36■□□□□ 0.53
PEX3P56589 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
PEX3P56589 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC18.36■□□□□ 0.53
PEX3P56589 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC18.36■□□□□ 0.53
PEX3P56589 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
PEX3P56589 PUS1-205ENST00000535067 838 ntTSL 3 BASIC18.36■□□□□ 0.53
PEX3P56589 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC18.36■□□□□ 0.53
PEX3P56589 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
PEX3P56589 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
PEX3P56589 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC18.36■□□□□ 0.53
PEX3P56589 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
PEX3P56589 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC18.36■□□□□ 0.53
PEX3P56589 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PEX3P56589 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PEX3P56589 AC016027.1-202ENST00000607927 1699 ntBASIC18.36■□□□□ 0.53
PEX3P56589 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PEX3P56589 AL031731.1-201ENST00000642131 2094 ntBASIC18.36■□□□□ 0.53
PEX3P56589 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PEX3P56589 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC18.36■□□□□ 0.53
PEX3P56589 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
PEX3P56589 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC18.35■□□□□ 0.53
PEX3P56589 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
PEX3P56589 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PEX3P56589 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PEX3P56589 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PEX3P56589 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
PEX3P56589 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PEX3P56589 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PEX3P56589 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
PEX3P56589 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
PEX3P56589 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
PEX3P56589 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC18.35■□□□□ 0.53
PEX3P56589 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PEX3P56589 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC18.35■□□□□ 0.53
PEX3P56589 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC18.35■□□□□ 0.53
PEX3P56589 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
PEX3P56589 RARRES2P8-201ENST00000566335 367 ntBASIC18.35■□□□□ 0.53
PEX3P56589 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC18.35■□□□□ 0.53
PEX3P56589 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC18.35■□□□□ 0.53
PEX3P56589 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC18.35■□□□□ 0.53
PEX3P56589 AC006538.3-201ENST00000612495 578 ntBASIC18.35■□□□□ 0.53
PEX3P56589 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC18.35■□□□□ 0.53
PEX3P56589 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC18.35■□□□□ 0.53
PEX3P56589 AC134684.3-201ENST00000641758 218 ntBASIC18.35■□□□□ 0.53
PEX3P56589 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PEX3P56589 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC18.35■□□□□ 0.53
PEX3P56589 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
PEX3P56589 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC18.35■□□□□ 0.53
PEX3P56589 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
PEX3P56589 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PEX3P56589 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PEX3P56589 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC18.35■□□□□ 0.53
PEX3P56589 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
PEX3P56589 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC18.34■□□□□ 0.53
PEX3P56589 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.34■□□□□ 0.53
PEX3P56589 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PEX3P56589 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PEX3P56589 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC18.34■□□□□ 0.53
PEX3P56589 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PEX3P56589 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PEX3P56589 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PEX3P56589 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC18.34■□□□□ 0.53
PEX3P56589 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC18.34■□□□□ 0.53
PEX3P56589 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC18.34■□□□□ 0.53
PEX3P56589 CFL1-202ENST00000524553 860 ntTSL 2 BASIC18.34■□□□□ 0.53
PEX3P56589 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
PEX3P56589 AL691403.2-201ENST00000618460 490 ntBASIC18.34■□□□□ 0.53
PEX3P56589 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PEX3P56589 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PEX3P56589 GGT4P-201ENST00000623672 1708 ntBASIC18.34■□□□□ 0.53
PEX3P56589 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
PEX3P56589 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
PEX3P56589 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PEX3P56589 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
PEX3P56589 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PEX3P56589 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PEX3P56589 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
PEX3P56589 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
PEX3P56589 WASH6P-202ENST00000359512 1437 ntBASIC18.33■□□□□ 0.53
PEX3P56589 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PEX3P56589 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PEX3P56589 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PEX3P56589 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC18.33■□□□□ 0.52
PEX3P56589 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 583.7 ms