Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC16.43■□□□□ 0.22
PKNOX1P55347 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.43■□□□□ 0.22
PKNOX1P55347 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.43■□□□□ 0.22
PKNOX1P55347 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.43■□□□□ 0.22
PKNOX1P55347 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PKNOX1P55347 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
PKNOX1P55347 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PKNOX1P55347 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PKNOX1P55347 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.43■□□□□ 0.22
PKNOX1P55347 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
PKNOX1P55347 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PKNOX1P55347 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
PKNOX1P55347 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
PKNOX1P55347 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PKNOX1P55347 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.43■□□□□ 0.22
PKNOX1P55347 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PKNOX1P55347 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PKNOX1P55347 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
PKNOX1P55347 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PKNOX1P55347 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PKNOX1P55347 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PKNOX1P55347 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PKNOX1P55347 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
PKNOX1P55347 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
PKNOX1P55347 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.42■□□□□ 0.22
PKNOX1P55347 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PKNOX1P55347 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PKNOX1P55347 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PKNOX1P55347 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PKNOX1P55347 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.42■□□□□ 0.22
PKNOX1P55347 AC006277.1-201ENST00000624348 1610 ntBASIC16.42■□□□□ 0.22
PKNOX1P55347 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
PKNOX1P55347 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PKNOX1P55347 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PKNOX1P55347 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC16.42■□□□□ 0.22
PKNOX1P55347 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.42■□□□□ 0.22
PKNOX1P55347 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PKNOX1P55347 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.42■□□□□ 0.22
PKNOX1P55347 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
PKNOX1P55347 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.42■□□□□ 0.22
PKNOX1P55347 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC16.42■□□□□ 0.22
PKNOX1P55347 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC16.42■□□□□ 0.22
PKNOX1P55347 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
PKNOX1P55347 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PKNOX1P55347 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.42■□□□□ 0.22
PKNOX1P55347 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
PKNOX1P55347 AL589182.2-201ENST00000619332 1049 ntBASIC16.42■□□□□ 0.22
PKNOX1P55347 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
PKNOX1P55347 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
PKNOX1P55347 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PKNOX1P55347 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PKNOX1P55347 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PKNOX1P55347 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PKNOX1P55347 AL365203.3-201ENST00000609742 2057 ntBASIC16.42■□□□□ 0.22
PKNOX1P55347 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PKNOX1P55347 DBET-201ENST00000630918 3363 ntBASIC16.42■□□□□ 0.22
PKNOX1P55347 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
PKNOX1P55347 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PKNOX1P55347 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.42■□□□□ 0.22
PKNOX1P55347 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
PKNOX1P55347 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PKNOX1P55347 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PKNOX1P55347 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PKNOX1P55347 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.42■□□□□ 0.22
PKNOX1P55347 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.41■□□□□ 0.22
PKNOX1P55347 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.41■□□□□ 0.22
PKNOX1P55347 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PKNOX1P55347 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PKNOX1P55347 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PKNOX1P55347 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
PKNOX1P55347 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PKNOX1P55347 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
PKNOX1P55347 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PKNOX1P55347 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
PKNOX1P55347 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PKNOX1P55347 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PKNOX1P55347 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PKNOX1P55347 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PKNOX1P55347 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PKNOX1P55347 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC16.41■□□□□ 0.22
PKNOX1P55347 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.41■□□□□ 0.22
PKNOX1P55347 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.41■□□□□ 0.22
PKNOX1P55347 KRT18P35-201ENST00000510488 1269 ntBASIC16.41■□□□□ 0.22
PKNOX1P55347 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PKNOX1P55347 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC16.41■□□□□ 0.22
PKNOX1P55347 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.41■□□□□ 0.22
PKNOX1P55347 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
PKNOX1P55347 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.41■□□□□ 0.22
PKNOX1P55347 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.41■□□□□ 0.22
PKNOX1P55347 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PKNOX1P55347 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PKNOX1P55347 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC16.41■□□□□ 0.22
PKNOX1P55347 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.41■□□□□ 0.22
PKNOX1P55347 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PKNOX1P55347 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
PKNOX1P55347 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
PKNOX1P55347 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PKNOX1P55347 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PKNOX1P55347 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
PKNOX1P55347 AL356309.3-201ENST00000624132 1934 ntBASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms