Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL4A4P53420 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC17.58■□□□□ 0.4
COL4A4P53420 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL4A4P53420 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL4A4P53420 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
COL4A4P53420 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC17.58■□□□□ 0.4
COL4A4P53420 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL4A4P53420 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL4A4P53420 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL4A4P53420 AC087499.6-201ENST00000411576 835 ntBASIC17.58■□□□□ 0.4
COL4A4P53420 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC17.58■□□□□ 0.4
COL4A4P53420 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC17.58■□□□□ 0.4
COL4A4P53420 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
COL4A4P53420 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL4A4P53420 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC17.58■□□□□ 0.4
COL4A4P53420 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC17.58■□□□□ 0.4
COL4A4P53420 AC099568.2-201ENST00000609194 695 ntBASIC17.58■□□□□ 0.4
COL4A4P53420 WNT11-204ENST00000621122 789 ntTSL 5 BASIC17.58■□□□□ 0.4
COL4A4P53420 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC17.58■□□□□ 0.4
COL4A4P53420 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.58■□□□□ 0.4
COL4A4P53420 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL4A4P53420 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
COL4A4P53420 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
COL4A4P53420 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.57■□□□□ 0.4
COL4A4P53420 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A4P53420 AC105020.1-201ENST00000435356 2205 ntBASIC17.57■□□□□ 0.4
COL4A4P53420 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A4P53420 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A4P53420 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A4P53420 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A4P53420 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.57■□□□□ 0.4
COL4A4P53420 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
COL4A4P53420 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
COL4A4P53420 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A4P53420 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.57■□□□□ 0.4
COL4A4P53420 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.57■□□□□ 0.4
COL4A4P53420 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A4P53420 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A4P53420 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
COL4A4P53420 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC17.57■□□□□ 0.4
COL4A4P53420 CTBP2P3-201ENST00000585629 1255 ntBASIC17.57■□□□□ 0.4
COL4A4P53420 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC17.57■□□□□ 0.4
COL4A4P53420 5S_rRNA.22-201ENST00000614916 106 ntBASIC17.57■□□□□ 0.4
COL4A4P53420 AL139011.1-202ENST00000642063 584 ntBASIC17.57■□□□□ 0.4
COL4A4P53420 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC17.57■□□□□ 0.4
COL4A4P53420 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
COL4A4P53420 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
COL4A4P53420 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A4P53420 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A4P53420 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A4P53420 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A4P53420 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A4P53420 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.57■□□□□ 0.4
COL4A4P53420 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.56■□□□□ 0.4
COL4A4P53420 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A4P53420 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A4P53420 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
COL4A4P53420 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A4P53420 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A4P53420 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC17.56■□□□□ 0.4
COL4A4P53420 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC17.56■□□□□ 0.4
COL4A4P53420 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A4P53420 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A4P53420 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A4P53420 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
COL4A4P53420 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A4P53420 AC114501.2-201ENST00000439631 535 ntBASIC17.56■□□□□ 0.4
COL4A4P53420 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC17.56■□□□□ 0.4
COL4A4P53420 AL589987.1-201ENST00000453380 819 ntBASIC17.56■□□□□ 0.4
COL4A4P53420 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC17.56■□□□□ 0.4
COL4A4P53420 FAM8A2P-201ENST00000528813 1142 ntBASIC17.56■□□□□ 0.4
COL4A4P53420 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
COL4A4P53420 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
COL4A4P53420 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
COL4A4P53420 MIR6775-201ENST00000617557 69 ntBASIC17.56■□□□□ 0.4
COL4A4P53420 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.56■□□□□ 0.4
COL4A4P53420 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC17.56■□□□□ 0.4
COL4A4P53420 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A4P53420 AC026471.1-201ENST00000564629 3026 ntBASIC17.56■□□□□ 0.4
COL4A4P53420 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A4P53420 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
COL4A4P53420 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
COL4A4P53420 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A4P53420 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A4P53420 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A4P53420 GOLGA2P9-201ENST00000596977 1937 ntBASIC17.56■□□□□ 0.4
COL4A4P53420 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC17.55■□□□□ 0.4
COL4A4P53420 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A4P53420 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
COL4A4P53420 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC17.55■□□□□ 0.4
COL4A4P53420 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A4P53420 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.55■□□□□ 0.4
COL4A4P53420 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A4P53420 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC17.55■□□□□ 0.4
COL4A4P53420 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC17.55■□□□□ 0.4
COL4A4P53420 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC17.55■□□□□ 0.4
COL4A4P53420 MFF-223ENST00000524634 647 ntTSL 2 BASIC17.55■□□□□ 0.4
COL4A4P53420 AC123567.1-201ENST00000548294 1261 ntBASIC17.55■□□□□ 0.4
COL4A4P53420 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
COL4A4P53420 AC133552.6-201ENST00000613406 534 ntBASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms