Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
CTCFP49711 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTCFP49711 ABALON-201ENST00000629058 1903 ntBASIC19.22■□□□□ 0.67
CTCFP49711 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
CTCFP49711 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTCFP49711 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTCFP49711 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC19.22■□□□□ 0.67
CTCFP49711 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CTCFP49711 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTCFP49711 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC19.22■□□□□ 0.67
CTCFP49711 NUS1P3-201ENST00000423502 862 ntBASIC19.22■□□□□ 0.67
CTCFP49711 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CTCFP49711 KRT18P34-201ENST00000488218 1270 ntBASIC19.22■□□□□ 0.67
CTCFP49711 AL512361.1-201ENST00000554200 418 ntBASIC19.22■□□□□ 0.67
CTCFP49711 AC105021.1-202ENST00000570572 669 ntBASIC19.22■□□□□ 0.67
CTCFP49711 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC19.22■□□□□ 0.67
CTCFP49711 MIR8072-201ENST00000614241 80 ntBASIC19.22■□□□□ 0.67
CTCFP49711 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTCFP49711 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC19.22■□□□□ 0.67
CTCFP49711 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTCFP49711 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
CTCFP49711 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
CTCFP49711 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTCFP49711 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC19.22■□□□□ 0.67
CTCFP49711 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC19.22■□□□□ 0.67
CTCFP49711 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CTCFP49711 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC19.22■□□□□ 0.67
CTCFP49711 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTCFP49711 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTCFP49711 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
CTCFP49711 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTCFP49711 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTCFP49711 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC19.21■□□□□ 0.67
CTCFP49711 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC19.21■□□□□ 0.67
CTCFP49711 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTCFP49711 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTCFP49711 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTCFP49711 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTCFP49711 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
CTCFP49711 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTCFP49711 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTCFP49711 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CTCFP49711 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTCFP49711 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC19.21■□□□□ 0.67
CTCFP49711 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC19.21■□□□□ 0.67
CTCFP49711 FADS2-205ENST00000517839 469 ntTSL 3 BASIC19.21■□□□□ 0.67
CTCFP49711 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC19.21■□□□□ 0.67
CTCFP49711 HNRNPUP1-201ENST00000554987 333 ntBASIC19.21■□□□□ 0.67
CTCFP49711 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC19.21■□□□□ 0.67
CTCFP49711 AL133215.2-201ENST00000609242 977 ntBASIC19.21■□□□□ 0.67
CTCFP49711 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTCFP49711 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTCFP49711 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC19.21■□□□□ 0.67
CTCFP49711 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTCFP49711 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
CTCFP49711 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
CTCFP49711 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC19.2■□□□□ 0.66
CTCFP49711 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CTCFP49711 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTCFP49711 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTCFP49711 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTCFP49711 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC19.2■□□□□ 0.66
CTCFP49711 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CTCFP49711 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTCFP49711 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC19.2■□□□□ 0.66
CTCFP49711 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC19.2■□□□□ 0.66
CTCFP49711 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC19.2■□□□□ 0.66
CTCFP49711 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTCFP49711 AP001889.1-201ENST00000525414 633 ntBASIC19.2■□□□□ 0.66
CTCFP49711 SLC25A47P1-201ENST00000531577 414 ntBASIC19.2■□□□□ 0.66
CTCFP49711 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC19.2■□□□□ 0.66
CTCFP49711 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC19.2■□□□□ 0.66
CTCFP49711 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CTCFP49711 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
CTCFP49711 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC19.2■□□□□ 0.66
CTCFP49711 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CTCFP49711 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
CTCFP49711 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTCFP49711 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CTCFP49711 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTCFP49711 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CTCFP49711 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTCFP49711 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC19.2■□□□□ 0.66
CTCFP49711 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTCFP49711 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTCFP49711 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
CTCFP49711 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
CTCFP49711 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CTCFP49711 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CTCFP49711 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC19.2■□□□□ 0.66
CTCFP49711 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTCFP49711 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
CTCFP49711 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CTCFP49711 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CTCFP49711 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTCFP49711 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
CTCFP49711 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTCFP49711 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTCFP49711 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CTCFP49711 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms