Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 FAM215A-202ENST00000632077 792 ntBASIC15.75■□□□□ 0.11
RFX3P48380 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC15.75■□□□□ 0.11
RFX3P48380 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
RFX3P48380 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC15.75■□□□□ 0.11
RFX3P48380 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RFX3P48380 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
RFX3P48380 FLJ38576-201ENST00000623820 2459 ntBASIC15.75■□□□□ 0.11
RFX3P48380 AC092171.3-201ENST00000610122 2651 ntBASIC15.75■□□□□ 0.11
RFX3P48380 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
RFX3P48380 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC15.75■□□□□ 0.11
RFX3P48380 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
RFX3P48380 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC15.75■□□□□ 0.11
RFX3P48380 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RFX3P48380 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC15.75■□□□□ 0.11
RFX3P48380 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
RFX3P48380 PCDHB19P-201ENST00000570871 2371 ntBASIC15.75■□□□□ 0.11
RFX3P48380 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC15.75■□□□□ 0.11
RFX3P48380 AL021920.2-201ENST00000624828 1351 ntBASIC15.75■□□□□ 0.11
RFX3P48380 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
RFX3P48380 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
RFX3P48380 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RFX3P48380 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RFX3P48380 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC15.74■□□□□ 0.11
RFX3P48380 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC15.74■□□□□ 0.11
RFX3P48380 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC15.74■□□□□ 0.11
RFX3P48380 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC15.74■□□□□ 0.11
RFX3P48380 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC15.74■□□□□ 0.11
RFX3P48380 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
RFX3P48380 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
RFX3P48380 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RFX3P48380 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RFX3P48380 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RFX3P48380 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
RFX3P48380 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RFX3P48380 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC15.74■□□□□ 0.11
RFX3P48380 AC093909.1-201ENST00000504731 1122 ntBASIC15.74■□□□□ 0.11
RFX3P48380 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC15.74■□□□□ 0.11
RFX3P48380 RPS29-206ENST00000557111 488 ntTSL 2 BASIC15.74■□□□□ 0.11
RFX3P48380 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC15.74■□□□□ 0.11
RFX3P48380 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC15.74■□□□□ 0.11
RFX3P48380 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RFX3P48380 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC15.74■□□□□ 0.11
RFX3P48380 AC005593.1-201ENST00000624894 515 ntBASIC15.74■□□□□ 0.11
RFX3P48380 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC15.74■□□□□ 0.11
RFX3P48380 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
RFX3P48380 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC15.74■□□□□ 0.11
RFX3P48380 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RFX3P48380 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC15.74■□□□□ 0.11
RFX3P48380 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RFX3P48380 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
RFX3P48380 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
RFX3P48380 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RFX3P48380 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
RFX3P48380 AC067930.6-201ENST00000623257 4947 ntBASIC15.74■□□□□ 0.11
RFX3P48380 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RFX3P48380 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC15.74■□□□□ 0.11
RFX3P48380 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC15.74■□□□□ 0.11
RFX3P48380 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC15.74■□□□□ 0.11
RFX3P48380 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
RFX3P48380 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC15.74■□□□□ 0.11
RFX3P48380 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RFX3P48380 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC15.74■□□□□ 0.11
RFX3P48380 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
RFX3P48380 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RFX3P48380 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
RFX3P48380 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
RFX3P48380 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
RFX3P48380 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
RFX3P48380 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
RFX3P48380 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC15.73■□□□□ 0.11
RFX3P48380 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
RFX3P48380 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC15.73■□□□□ 0.11
RFX3P48380 FOS-208ENST00000555686 1496 ntTSL 2 BASIC15.73■□□□□ 0.11
RFX3P48380 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RFX3P48380 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RFX3P48380 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RFX3P48380 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
RFX3P48380 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC15.73■□□□□ 0.11
RFX3P48380 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC15.73■□□□□ 0.11
RFX3P48380 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC15.73■□□□□ 0.11
RFX3P48380 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC15.73■□□□□ 0.11
RFX3P48380 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC15.73■□□□□ 0.11
RFX3P48380 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC15.73■□□□□ 0.11
RFX3P48380 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC15.73■□□□□ 0.11
RFX3P48380 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC15.73■□□□□ 0.11
RFX3P48380 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC15.73■□□□□ 0.11
RFX3P48380 CBFB-203ENST00000561924 584 ntTSL 5 BASIC15.73■□□□□ 0.11
RFX3P48380 AP001005.1-201ENST00000571755 1248 ntBASIC15.73■□□□□ 0.11
RFX3P48380 TERC-201ENST00000602385 541 ntBASIC15.73■□□□□ 0.11
RFX3P48380 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
RFX3P48380 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RFX3P48380 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
RFX3P48380 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
RFX3P48380 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RFX3P48380 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
RFX3P48380 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC15.73■□□□□ 0.11
RFX3P48380 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
RFX3P48380 PCDHA14-201ENST00000506751 2298 ntBASIC15.73■□□□□ 0.11
RFX3P48380 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC15.73■□□□□ 0.11
RFX3P48380 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms