Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
PTPN4P29074 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN4P29074 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
PTPN4P29074 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
PTPN4P29074 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN4P29074 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN4P29074 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN4P29074 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN4P29074 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN4P29074 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN4P29074 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN4P29074 ABCD1P5-201ENST00000445663 754 ntBASIC16.83■□□□□ 0.28
PTPN4P29074 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.83■□□□□ 0.28
PTPN4P29074 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.83■□□□□ 0.28
PTPN4P29074 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.83■□□□□ 0.28
PTPN4P29074 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.83■□□□□ 0.28
PTPN4P29074 SLC25A1P1-201ENST00000528351 927 ntBASIC16.83■□□□□ 0.28
PTPN4P29074 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN4P29074 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.83■□□□□ 0.28
PTPN4P29074 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.83■□□□□ 0.28
PTPN4P29074 AC139887.3-201ENST00000568585 713 ntBASIC16.83■□□□□ 0.28
PTPN4P29074 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC16.83■□□□□ 0.28
PTPN4P29074 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.83■□□□□ 0.28
PTPN4P29074 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.83■□□□□ 0.28
PTPN4P29074 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
PTPN4P29074 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
PTPN4P29074 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN4P29074 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN4P29074 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN4P29074 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN4P29074 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
PTPN4P29074 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN4P29074 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTPN4P29074 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
PTPN4P29074 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.82■□□□□ 0.28
PTPN4P29074 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTPN4P29074 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTPN4P29074 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.82■□□□□ 0.28
PTPN4P29074 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PTPN4P29074 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTPN4P29074 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC16.82■□□□□ 0.28
PTPN4P29074 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTPN4P29074 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.82■□□□□ 0.28
PTPN4P29074 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PTPN4P29074 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTPN4P29074 AC243591.1-201ENST00000452967 1364 ntBASIC16.82■□□□□ 0.28
PTPN4P29074 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTPN4P29074 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTPN4P29074 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PTPN4P29074 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.82■□□□□ 0.28
PTPN4P29074 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTPN4P29074 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC16.82■□□□□ 0.28
PTPN4P29074 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.82■□□□□ 0.28
PTPN4P29074 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.82■□□□□ 0.28
PTPN4P29074 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.82■□□□□ 0.28
PTPN4P29074 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC16.82■□□□□ 0.28
PTPN4P29074 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.82■□□□□ 0.28
PTPN4P29074 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
PTPN4P29074 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC16.82■□□□□ 0.28
PTPN4P29074 FAM215A-202ENST00000632077 792 ntBASIC16.82■□□□□ 0.28
PTPN4P29074 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
PTPN4P29074 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.82■□□□□ 0.28
PTPN4P29074 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.82■□□□□ 0.28
PTPN4P29074 DBET-201ENST00000630918 3363 ntBASIC16.82■□□□□ 0.28
PTPN4P29074 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PTPN4P29074 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PTPN4P29074 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTPN4P29074 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.82■□□□□ 0.28
PTPN4P29074 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PTPN4P29074 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
PTPN4P29074 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN4P29074 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN4P29074 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.81■□□□□ 0.28
PTPN4P29074 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.81■□□□□ 0.28
PTPN4P29074 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
PTPN4P29074 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN4P29074 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.81■□□□□ 0.28
PTPN4P29074 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.81■□□□□ 0.28
PTPN4P29074 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN4P29074 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN4P29074 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
PTPN4P29074 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN4P29074 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN4P29074 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.81■□□□□ 0.28
PTPN4P29074 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
PTPN4P29074 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN4P29074 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.81■□□□□ 0.28
PTPN4P29074 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN4P29074 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
PTPN4P29074 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
PTPN4P29074 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC16.81■□□□□ 0.28
PTPN4P29074 KRT18P58-201ENST00000527480 1120 ntBASIC16.81■□□□□ 0.28
PTPN4P29074 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.81■□□□□ 0.28
PTPN4P29074 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN4P29074 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
PTPN4P29074 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC16.81■□□□□ 0.28
PTPN4P29074 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.81■□□□□ 0.28
PTPN4P29074 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN4P29074 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC16.81■□□□□ 0.28
PTPN4P29074 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms