Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ERCC3P19447 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ERCC3P19447 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC19.31■□□□□ 0.68
ERCC3P19447 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
ERCC3P19447 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
ERCC3P19447 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC19.31■□□□□ 0.68
ERCC3P19447 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ERCC3P19447 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ERCC3P19447 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
ERCC3P19447 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
ERCC3P19447 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ERCC3P19447 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ERCC3P19447 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC19.3■□□□□ 0.68
ERCC3P19447 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC19.3■□□□□ 0.68
ERCC3P19447 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC3P19447 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC3P19447 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC3P19447 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC3P19447 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC3P19447 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC3P19447 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC3P19447 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC3P19447 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
ERCC3P19447 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
ERCC3P19447 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC3P19447 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC19.3■□□□□ 0.68
ERCC3P19447 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC3P19447 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC3P19447 VMA21-202ENST00000370361 693 ntTSL 5 BASIC19.3■□□□□ 0.68
ERCC3P19447 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC3P19447 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC3P19447 AC236430.1-201ENST00000402231 743 ntBASIC19.3■□□□□ 0.68
ERCC3P19447 SPDYE7P-202ENST00000420373 878 ntBASIC19.3■□□□□ 0.68
ERCC3P19447 UGT1A2P-201ENST00000454886 866 ntBASIC19.3■□□□□ 0.68
ERCC3P19447 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC19.3■□□□□ 0.68
ERCC3P19447 GATD1-206ENST00000526325 756 ntTSL 5 BASIC19.3■□□□□ 0.68
ERCC3P19447 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC19.3■□□□□ 0.68
ERCC3P19447 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC19.3■□□□□ 0.68
ERCC3P19447 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC19.3■□□□□ 0.68
ERCC3P19447 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC3P19447 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC19.3■□□□□ 0.68
ERCC3P19447 AC008267.7-201ENST00000624570 1194 ntBASIC19.3■□□□□ 0.68
ERCC3P19447 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
ERCC3P19447 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC3P19447 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC3P19447 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC3P19447 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC19.3■□□□□ 0.68
ERCC3P19447 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
ERCC3P19447 AP001094.4-201ENST00000579008 2176 ntBASIC19.3■□□□□ 0.68
ERCC3P19447 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC3P19447 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
ERCC3P19447 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC19.3■□□□□ 0.68
ERCC3P19447 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC3P19447 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC19.29■□□□□ 0.68
ERCC3P19447 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC19.29■□□□□ 0.68
ERCC3P19447 HARS-204ENST00000438307 1789 ntTSL 2 BASIC19.29■□□□□ 0.68
ERCC3P19447 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC3P19447 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC19.29■□□□□ 0.68
ERCC3P19447 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC3P19447 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC19.29■□□□□ 0.68
ERCC3P19447 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC3P19447 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
ERCC3P19447 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC3P19447 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC3P19447 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC3P19447 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC3P19447 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC3P19447 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC3P19447 MIR661-201ENST00000384842 89 ntBASIC19.29■□□□□ 0.68
ERCC3P19447 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
ERCC3P19447 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC3P19447 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC3P19447 AC087641.1-201ENST00000557561 1021 ntBASIC19.29■□□□□ 0.68
ERCC3P19447 AP000842.3-202ENST00000569238 1080 ntBASIC19.29■□□□□ 0.68
ERCC3P19447 PRR29-209ENST00000582540 967 ntTSL 2 BASIC19.29■□□□□ 0.68
ERCC3P19447 AC027307.2-201ENST00000591252 911 ntBASIC19.29■□□□□ 0.68
ERCC3P19447 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC3P19447 TNRC18P3-201ENST00000441896 2691 ntBASIC19.29■□□□□ 0.68
ERCC3P19447 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC3P19447 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
ERCC3P19447 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC3P19447 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC3P19447 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC19.29■□□□□ 0.68
ERCC3P19447 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
ERCC3P19447 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC3P19447 AL023806.1-201ENST00000603994 1649 ntBASIC19.29■□□□□ 0.68
ERCC3P19447 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC3P19447 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC3P19447 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC19.29■□□□□ 0.68
ERCC3P19447 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC19.28■□□□□ 0.68
ERCC3P19447 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
ERCC3P19447 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC19.28■□□□□ 0.68
ERCC3P19447 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
ERCC3P19447 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC19.28■□□□□ 0.68
ERCC3P19447 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC19.28■□□□□ 0.68
ERCC3P19447 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC19.28■□□□□ 0.68
ERCC3P19447 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
ERCC3P19447 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC19.28■□□□□ 0.68
ERCC3P19447 AC079328.2-201ENST00000561241 3354 ntBASIC19.28■□□□□ 0.68
ERCC3P19447 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms