Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.05■□□□□ 0.32
COL6A3P12111 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A3P12111 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A3P12111 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.05■□□□□ 0.32
COL6A3P12111 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC17.05■□□□□ 0.32
COL6A3P12111 AC073592.3-201ENST00000625118 1834 ntBASIC17.05■□□□□ 0.32
COL6A3P12111 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A3P12111 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC17.05■□□□□ 0.32
COL6A3P12111 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC17.05■□□□□ 0.32
COL6A3P12111 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
COL6A3P12111 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A3P12111 FAU-202ENST00000434372 533 ntTSL 2 BASIC17.05■□□□□ 0.32
COL6A3P12111 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
COL6A3P12111 AC106760.1-201ENST00000508690 800 ntBASIC17.05■□□□□ 0.32
COL6A3P12111 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC17.05■□□□□ 0.32
COL6A3P12111 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC17.05■□□□□ 0.32
COL6A3P12111 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
COL6A3P12111 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC17.05■□□□□ 0.32
COL6A3P12111 LARP4-220ENST00000615080 856 ntTSL 5 BASIC17.05■□□□□ 0.32
COL6A3P12111 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A3P12111 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.05■□□□□ 0.32
COL6A3P12111 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.05■□□□□ 0.32
COL6A3P12111 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A3P12111 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A3P12111 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC17.04■□□□□ 0.32
COL6A3P12111 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A3P12111 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A3P12111 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A3P12111 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A3P12111 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.04■□□□□ 0.32
COL6A3P12111 AZGP1P1-201ENST00000411909 902 ntBASIC17.04■□□□□ 0.32
COL6A3P12111 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A3P12111 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A3P12111 SUPT4H1P2-201ENST00000501248 353 ntBASIC17.04■□□□□ 0.32
COL6A3P12111 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC17.04■□□□□ 0.32
COL6A3P12111 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A3P12111 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A3P12111 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.04■□□□□ 0.32
COL6A3P12111 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC17.04■□□□□ 0.32
COL6A3P12111 AC138649.2-201ENST00000615886 705 ntBASIC17.04■□□□□ 0.32
COL6A3P12111 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A3P12111 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A3P12111 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A3P12111 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A3P12111 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.04■□□□□ 0.32
COL6A3P12111 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A3P12111 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A3P12111 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A3P12111 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A3P12111 RN7SL11P-201ENST00000471305 293 ntBASIC17.04■□□□□ 0.32
COL6A3P12111 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC17.04■□□□□ 0.32
COL6A3P12111 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
COL6A3P12111 AC074044.1-201ENST00000609673 707 ntBASIC17.04■□□□□ 0.32
COL6A3P12111 AP001065.2-201ENST00000617205 644 ntBASIC17.04■□□□□ 0.32
COL6A3P12111 AL158212.4-201ENST00000624062 1286 ntBASIC17.04■□□□□ 0.32
COL6A3P12111 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC17.04■□□□□ 0.32
COL6A3P12111 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A3P12111 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC17.04■□□□□ 0.32
COL6A3P12111 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
COL6A3P12111 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
COL6A3P12111 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A3P12111 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A3P12111 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A3P12111 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL6A3P12111 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC17.03■□□□□ 0.32
COL6A3P12111 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC17.03■□□□□ 0.32
COL6A3P12111 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL6A3P12111 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL6A3P12111 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.03■□□□□ 0.32
COL6A3P12111 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL6A3P12111 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL6A3P12111 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
COL6A3P12111 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
COL6A3P12111 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL6A3P12111 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL6A3P12111 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL6A3P12111 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL6A3P12111 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL6A3P12111 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL6A3P12111 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC17.03■□□□□ 0.32
COL6A3P12111 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC17.03■□□□□ 0.32
COL6A3P12111 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC17.03■□□□□ 0.32
COL6A3P12111 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC17.03■□□□□ 0.32
COL6A3P12111 AL359711.2-201ENST00000563105 872 ntBASIC17.03■□□□□ 0.32
COL6A3P12111 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC17.03■□□□□ 0.32
COL6A3P12111 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC17.03■□□□□ 0.32
COL6A3P12111 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC17.03■□□□□ 0.32
COL6A3P12111 AL049840.4-201ENST00000602422 811 ntBASIC17.03■□□□□ 0.32
COL6A3P12111 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL6A3P12111 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL6A3P12111 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL6A3P12111 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL6A3P12111 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL6A3P12111 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.03■□□□□ 0.32
COL6A3P12111 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL6A3P12111 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL6A3P12111 FABP5P3-202ENST00000477993 1027 ntTSL 5 BASIC17.03■□□□□ 0.32
COL6A3P12111 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC17.03■□□□□ 0.32
COL6A3P12111 NAA38-207ENST00000576861 556 ntTSL 3 BASIC17.03■□□□□ 0.32
COL6A3P12111 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms