Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL11A1P12107 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
COL11A1P12107 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.68■□□□□ 0.58
COL11A1P12107 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
COL11A1P12107 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
COL11A1P12107 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
COL11A1P12107 AC245100.5-201ENST00000452108 331 ntBASIC18.68■□□□□ 0.58
COL11A1P12107 AL589987.1-201ENST00000453380 819 ntBASIC18.68■□□□□ 0.58
COL11A1P12107 PTK7-212ENST00000476760 902 ntTSL 2 BASIC18.68■□□□□ 0.58
COL11A1P12107 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC18.68■□□□□ 0.58
COL11A1P12107 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC18.68■□□□□ 0.58
COL11A1P12107 TP53TG3HP-202ENST00000569755 579 ntBASIC18.68■□□□□ 0.58
COL11A1P12107 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC18.68■□□□□ 0.58
COL11A1P12107 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC18.68■□□□□ 0.58
COL11A1P12107 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC18.68■□□□□ 0.58
COL11A1P12107 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL11A1P12107 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC18.68■□□□□ 0.58
COL11A1P12107 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL11A1P12107 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL11A1P12107 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL11A1P12107 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
COL11A1P12107 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
COL11A1P12107 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL11A1P12107 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL11A1P12107 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC18.67■□□□□ 0.58
COL11A1P12107 AC114501.2-201ENST00000439631 535 ntBASIC18.67■□□□□ 0.58
COL11A1P12107 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC18.67■□□□□ 0.58
COL11A1P12107 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL11A1P12107 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC18.67■□□□□ 0.58
COL11A1P12107 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC18.67■□□□□ 0.58
COL11A1P12107 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC18.67■□□□□ 0.58
COL11A1P12107 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC18.67■□□□□ 0.58
COL11A1P12107 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL11A1P12107 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.67■□□□□ 0.58
COL11A1P12107 AC004461.2-201ENST00000629517 803 ntBASIC18.67■□□□□ 0.58
COL11A1P12107 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
COL11A1P12107 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL11A1P12107 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL11A1P12107 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
COL11A1P12107 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
COL11A1P12107 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL11A1P12107 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
COL11A1P12107 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC18.67■□□□□ 0.58
COL11A1P12107 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC18.67■□□□□ 0.58
COL11A1P12107 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL11A1P12107 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL11A1P12107 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC18.67■□□□□ 0.58
COL11A1P12107 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL11A1P12107 U91328.1-201ENST00000437528 223 ntBASIC18.67■□□□□ 0.58
COL11A1P12107 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC18.67■□□□□ 0.58
COL11A1P12107 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC18.67■□□□□ 0.58
COL11A1P12107 TPRX2P-201ENST00000535362 881 ntBASIC18.67■□□□□ 0.58
COL11A1P12107 NOP2-220ENST00000545915 630 ntTSL 2 BASIC18.67■□□□□ 0.58
COL11A1P12107 IFT20-216ENST00000588477 774 ntTSL 5 BASIC18.67■□□□□ 0.58
COL11A1P12107 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC18.67■□□□□ 0.58
COL11A1P12107 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC18.67■□□□□ 0.58
COL11A1P12107 RNF216P1-203ENST00000404404 2427 ntBASIC18.67■□□□□ 0.58
COL11A1P12107 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL11A1P12107 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL11A1P12107 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL11A1P12107 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL11A1P12107 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.67■□□□□ 0.58
COL11A1P12107 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL11A1P12107 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL11A1P12107 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL11A1P12107 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL11A1P12107 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL11A1P12107 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL11A1P12107 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL11A1P12107 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL11A1P12107 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL11A1P12107 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL11A1P12107 AC105020.1-201ENST00000435356 2205 ntBASIC18.66■□□□□ 0.58
COL11A1P12107 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL11A1P12107 UBALD1-205ENST00000590891 2641 ntBASIC18.66■□□□□ 0.58
COL11A1P12107 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL11A1P12107 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC18.66■□□□□ 0.58
COL11A1P12107 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.66■□□□□ 0.58
COL11A1P12107 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC18.66■□□□□ 0.58
COL11A1P12107 AC098850.1-201ENST00000419919 790 ntBASIC18.66■□□□□ 0.58
COL11A1P12107 TMEM14DP-201ENST00000422205 345 ntBASIC18.66■□□□□ 0.58
COL11A1P12107 ACA64.2-201ENST00000459014 129 ntBASIC18.66■□□□□ 0.58
COL11A1P12107 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
COL11A1P12107 SRD5A3P1-201ENST00000603021 949 ntBASIC18.66■□□□□ 0.58
COL11A1P12107 AC008494.3-201ENST00000606615 944 ntBASIC18.66■□□□□ 0.58
COL11A1P12107 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL11A1P12107 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL11A1P12107 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL11A1P12107 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL11A1P12107 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL11A1P12107 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
COL11A1P12107 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL11A1P12107 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL11A1P12107 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL11A1P12107 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL11A1P12107 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC18.66■□□□□ 0.58
COL11A1P12107 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL11A1P12107 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL11A1P12107 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL11A1P12107 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms