Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
SHOX2O60902 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
SHOX2O60902 POU5F1P6-201ENST00000466990 990 ntBASIC16.73■□□□□ 0.27
SHOX2O60902 AC068472.1-201ENST00000474589 881 ntBASIC16.73■□□□□ 0.27
SHOX2O60902 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
SHOX2O60902 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC16.73■□□□□ 0.27
SHOX2O60902 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC16.73■□□□□ 0.27
SHOX2O60902 USP36-216ENST00000589424 970 ntTSL 5 BASIC16.73■□□□□ 0.27
SHOX2O60902 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SHOX2O60902 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC16.73■□□□□ 0.27
SHOX2O60902 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SHOX2O60902 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SHOX2O60902 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SHOX2O60902 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
SHOX2O60902 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
SHOX2O60902 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.73■□□□□ 0.27
SHOX2O60902 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
SHOX2O60902 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SHOX2O60902 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SHOX2O60902 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SHOX2O60902 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.73■□□□□ 0.27
SHOX2O60902 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
SHOX2O60902 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SHOX2O60902 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC16.73■□□□□ 0.27
SHOX2O60902 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC16.73■□□□□ 0.27
SHOX2O60902 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
SHOX2O60902 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SHOX2O60902 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC16.73■□□□□ 0.27
SHOX2O60902 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SHOX2O60902 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.73■□□□□ 0.27
SHOX2O60902 COCH-203ENST00000460581 2688 ntTSL 2 BASIC16.73■□□□□ 0.27
SHOX2O60902 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC16.72■□□□□ 0.27
SHOX2O60902 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SHOX2O60902 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
SHOX2O60902 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SHOX2O60902 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SHOX2O60902 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC16.72■□□□□ 0.27
SHOX2O60902 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SHOX2O60902 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.72■□□□□ 0.27
SHOX2O60902 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.72■□□□□ 0.27
SHOX2O60902 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SHOX2O60902 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
SHOX2O60902 AC005840.4-201ENST00000541242 2494 ntBASIC16.72■□□□□ 0.27
SHOX2O60902 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC16.72■□□□□ 0.27
SHOX2O60902 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
SHOX2O60902 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SHOX2O60902 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SHOX2O60902 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SHOX2O60902 SAPCD2P2-201ENST00000431719 1174 ntBASIC16.72■□□□□ 0.27
SHOX2O60902 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC16.72■□□□□ 0.27
SHOX2O60902 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SHOX2O60902 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC16.72■□□□□ 0.27
SHOX2O60902 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC16.72■□□□□ 0.27
SHOX2O60902 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC16.72■□□□□ 0.27
SHOX2O60902 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC16.72■□□□□ 0.27
SHOX2O60902 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SHOX2O60902 AL031731.1-201ENST00000642131 2094 ntBASIC16.72■□□□□ 0.27
SHOX2O60902 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
SHOX2O60902 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SHOX2O60902 AL512652.2-201ENST00000625156 1716 ntBASIC16.72■□□□□ 0.27
SHOX2O60902 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
SHOX2O60902 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC16.72■□□□□ 0.27
SHOX2O60902 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
SHOX2O60902 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
SHOX2O60902 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SHOX2O60902 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
SHOX2O60902 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SHOX2O60902 AC009336.1-201ENST00000608941 1553 ntBASIC16.72■□□□□ 0.27
SHOX2O60902 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SHOX2O60902 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SHOX2O60902 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC16.72■□□□□ 0.27
SHOX2O60902 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
SHOX2O60902 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SHOX2O60902 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
SHOX2O60902 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
SHOX2O60902 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SHOX2O60902 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.71■□□□□ 0.27
SHOX2O60902 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SHOX2O60902 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SHOX2O60902 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
SHOX2O60902 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.71■□□□□ 0.27
SHOX2O60902 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
SHOX2O60902 MARS-233ENST00000628866 2583 ntTSL 5 BASIC16.71■□□□□ 0.27
SHOX2O60902 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC16.71■□□□□ 0.27
SHOX2O60902 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SHOX2O60902 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC16.71■□□□□ 0.27
SHOX2O60902 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SHOX2O60902 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SHOX2O60902 INGX-201ENST00000359239 846 ntBASIC16.71■□□□□ 0.27
SHOX2O60902 MIR1238-201ENST00000408483 83 ntBASIC16.71■□□□□ 0.27
SHOX2O60902 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC16.71■□□□□ 0.27
SHOX2O60902 AC007663.1-201ENST00000438948 1240 ntBASIC16.71■□□□□ 0.27
SHOX2O60902 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC16.71■□□□□ 0.27
SHOX2O60902 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.71■□□□□ 0.27
SHOX2O60902 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.71■□□□□ 0.27
SHOX2O60902 AC111152.3-201ENST00000569699 673 ntBASIC16.71■□□□□ 0.27
SHOX2O60902 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SHOX2O60902 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC16.71■□□□□ 0.27
SHOX2O60902 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC16.71■□□□□ 0.27
SHOX2O60902 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms