Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC20.98■□□□□ 0.95
NPHP1O15259 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC20.98■□□□□ 0.95
NPHP1O15259 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP1O15259 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP1O15259 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP1O15259 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP1O15259 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC20.97■□□□□ 0.95
NPHP1O15259 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP1O15259 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC20.97■□□□□ 0.95
NPHP1O15259 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC20.97■□□□□ 0.95
NPHP1O15259 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC20.97■□□□□ 0.95
NPHP1O15259 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC20.97■□□□□ 0.95
NPHP1O15259 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP1O15259 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP1O15259 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP1O15259 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP1O15259 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP1O15259 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP1O15259 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP1O15259 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC20.97■□□□□ 0.95
NPHP1O15259 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP1O15259 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC20.97■□□□□ 0.95
NPHP1O15259 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC20.97■□□□□ 0.95
NPHP1O15259 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP1O15259 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC20.97■□□□□ 0.95
NPHP1O15259 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
NPHP1O15259 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC20.97■□□□□ 0.95
NPHP1O15259 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP1O15259 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
NPHP1O15259 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP1O15259 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
NPHP1O15259 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
NPHP1O15259 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP1O15259 AP3S2-216ENST00000617003 1561 ntBASIC20.97■□□□□ 0.95
NPHP1O15259 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP1O15259 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP1O15259 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP1O15259 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP1O15259 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC20.96■□□□□ 0.95
NPHP1O15259 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP1O15259 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP1O15259 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP1O15259 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP1O15259 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP1O15259 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC20.96■□□□□ 0.95
NPHP1O15259 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP1O15259 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP1O15259 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC20.96■□□□□ 0.95
NPHP1O15259 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP1O15259 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC20.96■□□□□ 0.95
NPHP1O15259 AC093525.9-201ENST00000624961 1746 ntBASIC20.96■□□□□ 0.95
NPHP1O15259 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP1O15259 BICD1-207ENST00000551848 1962 ntBASIC20.96■□□□□ 0.95
NPHP1O15259 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP1O15259 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP1O15259 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP1O15259 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP1O15259 OR8S1-201ENST00000310194 1080 ntBASIC20.96■□□□□ 0.95
NPHP1O15259 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP1O15259 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
NPHP1O15259 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP1O15259 MRPS18AP1-201ENST00000414458 589 ntBASIC20.96■□□□□ 0.95
NPHP1O15259 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC20.96■□□□□ 0.95
NPHP1O15259 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP1O15259 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC20.96■□□□□ 0.95
NPHP1O15259 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP1O15259 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC20.96■□□□□ 0.95
NPHP1O15259 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
NPHP1O15259 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
NPHP1O15259 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP1O15259 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP1O15259 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP1O15259 CD276-201ENST00000318424 2738 ntTSL 5 BASIC20.96■□□□□ 0.95
NPHP1O15259 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP1O15259 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP1O15259 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP1O15259 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP1O15259 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
NPHP1O15259 FLJ16779-201ENST00000612722 7638 ntBASIC20.96■□□□□ 0.95
NPHP1O15259 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.95
NPHP1O15259 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP1O15259 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC20.95■□□□□ 0.94
NPHP1O15259 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
NPHP1O15259 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP1O15259 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC20.95■□□□□ 0.94
NPHP1O15259 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
NPHP1O15259 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP1O15259 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP1O15259 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC20.95■□□□□ 0.94
NPHP1O15259 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC20.95■□□□□ 0.94
NPHP1O15259 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP1O15259 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC20.95■□□□□ 0.94
NPHP1O15259 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC20.95■□□□□ 0.94
NPHP1O15259 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC20.95■□□□□ 0.94
NPHP1O15259 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC20.95■□□□□ 0.94
NPHP1O15259 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC20.95■□□□□ 0.94
NPHP1O15259 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC20.95■□□□□ 0.94
NPHP1O15259 CR383656.12-201ENST00000549567 513 ntBASIC20.95■□□□□ 0.94
NPHP1O15259 AL596325.1-201ENST00000563991 1082 ntBASIC20.95■□□□□ 0.94
NPHP1O15259 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms