Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 AP000867.3-201ENST00000524675 377 ntBASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 AC092329.2-201ENST00000598402 547 ntBASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 AL512652.2-201ENST00000625156 1716 ntBASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 AL603832.2-201ENST00000566195 2125 ntBASIC16.78■□□□□ 0.28
TRIM49D1C9J1S8 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM49D1C9J1S8 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM49D1C9J1S8 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM49D1C9J1S8 TOP3BP1-201ENST00000420768 1380 ntBASIC16.77■□□□□ 0.28
TRIM49D1C9J1S8 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
TRIM49D1C9J1S8 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM49D1C9J1S8 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM49D1C9J1S8 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM49D1C9J1S8 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM49D1C9J1S8 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.77■□□□□ 0.28
TRIM49D1C9J1S8 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM49D1C9J1S8 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM49D1C9J1S8 GGT4P-201ENST00000623672 1708 ntBASIC16.77■□□□□ 0.28
TRIM49D1C9J1S8 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM49D1C9J1S8 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.77■□□□□ 0.28
TRIM49D1C9J1S8 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.77■□□□□ 0.28
TRIM49D1C9J1S8 AC010491.1-201ENST00000563101 2797 ntBASIC16.77■□□□□ 0.28
TRIM49D1C9J1S8 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM49D1C9J1S8 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM49D1C9J1S8 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.77■□□□□ 0.28
TRIM49D1C9J1S8 PCED1CP-201ENST00000419887 785 ntBASIC16.77■□□□□ 0.28
TRIM49D1C9J1S8 BX005266.1-201ENST00000473402 457 ntBASIC16.77■□□□□ 0.28
TRIM49D1C9J1S8 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.77■□□□□ 0.28
TRIM49D1C9J1S8 MIR5100-201ENST00000579544 119 ntBASIC16.77■□□□□ 0.28
TRIM49D1C9J1S8 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.77■□□□□ 0.28
TRIM49D1C9J1S8 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
TRIM49D1C9J1S8 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.77■□□□□ 0.28
TRIM49D1C9J1S8 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM49D1C9J1S8 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM49D1C9J1S8 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM49D1C9J1S8 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM49D1C9J1S8 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM49D1C9J1S8 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
TRIM49D1C9J1S8 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 AL031731.1-201ENST00000642131 2094 ntBASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 NUS1P2-201ENST00000417358 873 ntBASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 MIR3180-1-201ENST00000580374 94 ntBASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 MIR3180-3-201ENST00000584616 94 ntBASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 AC099336.1-202ENST00000602961 463 ntBASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 AC064862.7-201ENST00000604520 867 ntBASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.76■□□□□ 0.27
TRIM49D1C9J1S8 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms