Protein–RNA interactions for Protein: Q96T58

SPEN, Msx2-interacting protein, humanhuman

Known RBP Predictions only

Length 3,664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPENQ96T58 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SPENQ96T58 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SPENQ96T58 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC21.89■■□□□ 1.1
SPENQ96T58 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC21.89■■□□□ 1.09
SPENQ96T58 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
SPENQ96T58 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.88■■□□□ 1.09
SPENQ96T58 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SPENQ96T58 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.88■■□□□ 1.09
SPENQ96T58 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21.88■■□□□ 1.09
SPENQ96T58 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SPENQ96T58 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
SPENQ96T58 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SPENQ96T58 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
SPENQ96T58 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SPENQ96T58 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.88■■□□□ 1.09
SPENQ96T58 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.87■■□□□ 1.09
SPENQ96T58 AC092028.1-203ENST00000608262 953 ntBASIC21.87■■□□□ 1.09
SPENQ96T58 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SPENQ96T58 BX664725.1-201ENST00000438252 379 ntBASIC21.87■■□□□ 1.09
SPENQ96T58 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
SPENQ96T58 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SPENQ96T58 AC137630.3-201ENST00000607245 391 ntBASIC21.87■■□□□ 1.09
SPENQ96T58 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC21.87■■□□□ 1.09
SPENQ96T58 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
SPENQ96T58 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SPENQ96T58 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
SPENQ96T58 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
SPENQ96T58 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
SPENQ96T58 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
SPENQ96T58 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SPENQ96T58 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC21.85■■□□□ 1.09
SPENQ96T58 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SPENQ96T58 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.85■■□□□ 1.09
SPENQ96T58 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SPENQ96T58 TSPY9P-201ENST00000440215 945 ntBASIC21.85■■□□□ 1.09
SPENQ96T58 TSPY11P-201ENST00000442607 1045 ntBASIC21.85■■□□□ 1.09
SPENQ96T58 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.85■■□□□ 1.09
SPENQ96T58 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SPENQ96T58 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
SPENQ96T58 PROC-203ENST00000409048 1586 ntTSL 5 BASIC21.85■■□□□ 1.09
SPENQ96T58 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
SPENQ96T58 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
SPENQ96T58 AC096631.2-201ENST00000436136 790 ntBASIC21.84■■□□□ 1.09
SPENQ96T58 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21.84■■□□□ 1.09
SPENQ96T58 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC21.84■■□□□ 1.09
SPENQ96T58 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
SPENQ96T58 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.84■■□□□ 1.09
SPENQ96T58 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
SPENQ96T58 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
SPENQ96T58 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
SPENQ96T58 AC005837.3-201ENST00000612163 286 ntBASIC21.83■■□□□ 1.09
SPENQ96T58 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.83■■□□□ 1.09
SPENQ96T58 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SPENQ96T58 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
SPENQ96T58 ZNRF2P3-201ENST00000424200 374 ntBASIC21.83■■□□□ 1.09
SPENQ96T58 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
SPENQ96T58 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
SPENQ96T58 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SPENQ96T58 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
SPENQ96T58 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.82■■□□□ 1.08
SPENQ96T58 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC21.82■■□□□ 1.08
SPENQ96T58 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SPENQ96T58 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SPENQ96T58 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SPENQ96T58 AL031432.3-201ENST00000607698 485 ntBASIC21.81■■□□□ 1.08
SPENQ96T58 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.81■■□□□ 1.08
SPENQ96T58 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.81■■□□□ 1.08
SPENQ96T58 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.8■■□□□ 1.08
SPENQ96T58 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SPENQ96T58 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.8■■□□□ 1.08
SPENQ96T58 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SPENQ96T58 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
SPENQ96T58 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SPENQ96T58 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
SPENQ96T58 KRT18P24-201ENST00000344739 1156 ntBASIC21.79■■□□□ 1.08
SPENQ96T58 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
SPENQ96T58 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
SPENQ96T58 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.79■■□□□ 1.08
SPENQ96T58 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
SPENQ96T58 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
SPENQ96T58 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.79■■□□□ 1.08
SPENQ96T58 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
SPENQ96T58 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.78■■□□□ 1.08
SPENQ96T58 GUK1-205ENST00000366722 850 ntTSL 3 BASIC21.78■■□□□ 1.08
SPENQ96T58 NALT1-201ENST00000429224 738 ntTSL 5 BASIC21.78■■□□□ 1.08
SPENQ96T58 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SPENQ96T58 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SPENQ96T58 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SPENQ96T58 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
SPENQ96T58 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SPENQ96T58 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SPENQ96T58 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC21.77■■□□□ 1.08
SPENQ96T58 SRR-208ENST00000576848 588 ntTSL 4 BASIC21.77■■□□□ 1.08
SPENQ96T58 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.77■■□□□ 1.08
SPENQ96T58 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
SPENQ96T58 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
SPENQ96T58 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
SPENQ96T58 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SPENQ96T58 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.77■■□□□ 1.08
SPENQ96T58 AC120024.1-201ENST00000562672 995 ntBASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 12.3 ms