Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC22.46■■□□□ 1.19
COL21A1Q96P44 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
COL21A1Q96P44 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
COL21A1Q96P44 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
COL21A1Q96P44 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
COL21A1Q96P44 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC22.46■■□□□ 1.19
COL21A1Q96P44 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC22.45■■□□□ 1.18
COL21A1Q96P44 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC22.45■■□□□ 1.18
COL21A1Q96P44 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.18
COL21A1Q96P44 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
COL21A1Q96P44 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC22.44■■□□□ 1.18
COL21A1Q96P44 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
COL21A1Q96P44 AC096887.2-201ENST00000623443 1957 ntBASIC22.43■■□□□ 1.18
COL21A1Q96P44 AC093536.1-201ENST00000569153 554 ntBASIC22.43■■□□□ 1.18
COL21A1Q96P44 GFER-205ENST00000569451 517 ntTSL 5 BASIC22.43■■□□□ 1.18
COL21A1Q96P44 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
COL21A1Q96P44 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC22.43■■□□□ 1.18
COL21A1Q96P44 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
COL21A1Q96P44 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.18
COL21A1Q96P44 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
COL21A1Q96P44 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
COL21A1Q96P44 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
COL21A1Q96P44 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
COL21A1Q96P44 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
COL21A1Q96P44 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC22.41■■□□□ 1.18
COL21A1Q96P44 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
COL21A1Q96P44 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC22.41■■□□□ 1.18
COL21A1Q96P44 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
COL21A1Q96P44 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC22.41■■□□□ 1.18
COL21A1Q96P44 HYI-213ENST00000583037 1322 ntTSL 5 BASIC22.4■■□□□ 1.18
COL21A1Q96P44 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC22.4■■□□□ 1.18
COL21A1Q96P44 ABHD17AP5-201ENST00000580133 923 ntBASIC22.4■■□□□ 1.18
COL21A1Q96P44 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
COL21A1Q96P44 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC22.4■■□□□ 1.18
COL21A1Q96P44 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
COL21A1Q96P44 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
COL21A1Q96P44 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC22.39■■□□□ 1.17
COL21A1Q96P44 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
COL21A1Q96P44 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
COL21A1Q96P44 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
COL21A1Q96P44 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC22.39■■□□□ 1.17
COL21A1Q96P44 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
COL21A1Q96P44 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC22.38■■□□□ 1.17
COL21A1Q96P44 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
COL21A1Q96P44 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
COL21A1Q96P44 LTK-203ENST00000453182 2412 ntTSL 2 BASIC22.37■■□□□ 1.17
COL21A1Q96P44 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
COL21A1Q96P44 AC026202.3-201ENST00000600805 1127 ntBASIC22.37■■□□□ 1.17
COL21A1Q96P44 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC22.37■■□□□ 1.17
COL21A1Q96P44 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
COL21A1Q96P44 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
COL21A1Q96P44 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC22.36■■□□□ 1.17
COL21A1Q96P44 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
COL21A1Q96P44 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
COL21A1Q96P44 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC22.36■■□□□ 1.17
COL21A1Q96P44 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC22.36■■□□□ 1.17
COL21A1Q96P44 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC22.36■■□□□ 1.17
COL21A1Q96P44 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
COL21A1Q96P44 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
COL21A1Q96P44 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
COL21A1Q96P44 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC22.35■■□□□ 1.17
COL21A1Q96P44 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
COL21A1Q96P44 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC22.35■■□□□ 1.17
COL21A1Q96P44 RAP2CP1-202ENST00000605179 643 ntBASIC22.35■■□□□ 1.17
COL21A1Q96P44 AC133552.2-201ENST00000619106 1032 ntBASIC22.35■■□□□ 1.17
COL21A1Q96P44 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
COL21A1Q96P44 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
COL21A1Q96P44 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC22.35■■□□□ 1.17
COL21A1Q96P44 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
COL21A1Q96P44 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC22.35■■□□□ 1.17
COL21A1Q96P44 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
COL21A1Q96P44 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
COL21A1Q96P44 AC009831.1-201ENST00000580420 1582 ntBASIC22.34■■□□□ 1.17
COL21A1Q96P44 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
COL21A1Q96P44 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
COL21A1Q96P44 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
COL21A1Q96P44 HES4-204ENST00000484667 667 ntTSL 3 BASIC22.34■■□□□ 1.17
COL21A1Q96P44 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
COL21A1Q96P44 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
COL21A1Q96P44 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC22.33■■□□□ 1.17
COL21A1Q96P44 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.16
COL21A1Q96P44 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC22.32■■□□□ 1.16
COL21A1Q96P44 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC22.32■■□□□ 1.16
COL21A1Q96P44 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC22.32■■□□□ 1.16
COL21A1Q96P44 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
COL21A1Q96P44 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL21A1Q96P44 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC22.32■■□□□ 1.16
COL21A1Q96P44 AC142381.3-201ENST00000568208 1670 ntBASIC22.32■■□□□ 1.16
COL21A1Q96P44 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC22.32■■□□□ 1.16
COL21A1Q96P44 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL21A1Q96P44 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC22.31■■□□□ 1.16
COL21A1Q96P44 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL21A1Q96P44 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL21A1Q96P44 AC022211.4-201ENST00000625094 2161 ntBASIC22.31■■□□□ 1.16
COL21A1Q96P44 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL21A1Q96P44 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL21A1Q96P44 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL21A1Q96P44 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
COL21A1Q96P44 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC22.31■■□□□ 1.16
COL21A1Q96P44 U85056.1-201ENST00000616429 682 ntBASIC22.31■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms