Protein–RNA interactions for Protein: Q8WXH0

SYNE2, Nesprin-2, humanhuman

Known RBP Predictions only

Length 6,885 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2Q8WXH0 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC10.09□□□□□ -0.79
SYNE2Q8WXH0 MIR3960-201ENST00000583311 91 ntBASIC10.09□□□□□ -0.79
SYNE2Q8WXH0 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC10.09□□□□□ -0.79
SYNE2Q8WXH0 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC10.09□□□□□ -0.79
SYNE2Q8WXH0 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC10.09□□□□□ -0.79
SYNE2Q8WXH0 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
SYNE2Q8WXH0 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC10.09□□□□□ -0.79
SYNE2Q8WXH0 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC10.09□□□□□ -0.79
SYNE2Q8WXH0 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC10.09□□□□□ -0.79
SYNE2Q8WXH0 SP2-202ENST00000613139 908 ntTSL 5 BASIC10.09□□□□□ -0.79
SYNE2Q8WXH0 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
SYNE2Q8WXH0 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
SYNE2Q8WXH0 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC10.08□□□□□ -0.8
SYNE2Q8WXH0 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC10.08□□□□□ -0.8
SYNE2Q8WXH0 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
SYNE2Q8WXH0 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC10.08□□□□□ -0.8
SYNE2Q8WXH0 PARP1-210ENST00000629232 477 ntTSL 5 BASIC10.08□□□□□ -0.8
SYNE2Q8WXH0 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC10.08□□□□□ -0.8
SYNE2Q8WXH0 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC10.08□□□□□ -0.8
SYNE2Q8WXH0 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC10.08□□□□□ -0.8
SYNE2Q8WXH0 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC10.08□□□□□ -0.8
SYNE2Q8WXH0 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
SYNE2Q8WXH0 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC10.07□□□□□ -0.8
SYNE2Q8WXH0 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC10.07□□□□□ -0.8
SYNE2Q8WXH0 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC10.07□□□□□ -0.8
SYNE2Q8WXH0 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC10.07□□□□□ -0.8
SYNE2Q8WXH0 DUX4L2-201ENST00000561772 1275 ntBASIC10.07□□□□□ -0.8
SYNE2Q8WXH0 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
SYNE2Q8WXH0 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
SYNE2Q8WXH0 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC10.07□□□□□ -0.8
SYNE2Q8WXH0 DUX4L6-201ENST00000626483 1275 ntBASIC10.07□□□□□ -0.8
SYNE2Q8WXH0 DUX4L1-201ENST00000627662 1275 ntBASIC10.07□□□□□ -0.8
SYNE2Q8WXH0 DUX4L8-201ENST00000629013 1275 ntBASIC10.07□□□□□ -0.8
SYNE2Q8WXH0 DUX4L3-201ENST00000630187 1275 ntBASIC10.07□□□□□ -0.8
SYNE2Q8WXH0 DUX4L7-201ENST00000630678 1275 ntBASIC10.07□□□□□ -0.8
SYNE2Q8WXH0 DUX4L5-201ENST00000630834 1275 ntBASIC10.07□□□□□ -0.8
SYNE2Q8WXH0 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
SYNE2Q8WXH0 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
SYNE2Q8WXH0 MAP2K4P1-201ENST00000438453 1195 ntBASIC10.06□□□□□ -0.8
SYNE2Q8WXH0 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC10.06□□□□□ -0.8
SYNE2Q8WXH0 SNX3-202ENST00000349379 890 ntTSL 2 BASIC10.06□□□□□ -0.8
SYNE2Q8WXH0 AK3-203ENST00000447596 705 ntTSL 2 BASIC10.06□□□□□ -0.8
SYNE2Q8WXH0 MTDHP2-201ENST00000601468 714 ntBASIC10.06□□□□□ -0.8
SYNE2Q8WXH0 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC10.06□□□□□ -0.8
SYNE2Q8WXH0 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
SYNE2Q8WXH0 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
SYNE2Q8WXH0 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC10.06□□□□□ -0.8
SYNE2Q8WXH0 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
SYNE2Q8WXH0 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC10.06□□□□□ -0.8
SYNE2Q8WXH0 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC10.06□□□□□ -0.8
SYNE2Q8WXH0 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
SYNE2Q8WXH0 JTB-203ENST00000368589 1216 ntTSL 2 BASIC10.06□□□□□ -0.8
SYNE2Q8WXH0 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC10.06□□□□□ -0.8
SYNE2Q8WXH0 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC10.06□□□□□ -0.8
SYNE2Q8WXH0 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
SYNE2Q8WXH0 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
SYNE2Q8WXH0 SMUG1P1-201ENST00000590640 811 ntBASIC10.05□□□□□ -0.8
SYNE2Q8WXH0 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC10.05□□□□□ -0.8
SYNE2Q8WXH0 AC120024.1-201ENST00000562672 995 ntBASIC10.05□□□□□ -0.8
SYNE2Q8WXH0 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
SYNE2Q8WXH0 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
SYNE2Q8WXH0 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
SYNE2Q8WXH0 AC080038.1-201ENST00000611274 1154 ntBASIC10.05□□□□□ -0.8
SYNE2Q8WXH0 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
SYNE2Q8WXH0 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC10.05□□□□□ -0.8
SYNE2Q8WXH0 MIR1224-201ENST00000408193 85 ntBASIC10.05□□□□□ -0.8
SYNE2Q8WXH0 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
SYNE2Q8WXH0 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
SYNE2Q8WXH0 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
SYNE2Q8WXH0 AC127502.1-201ENST00000399971 1502 ntBASIC10.04□□□□□ -0.8
SYNE2Q8WXH0 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
SYNE2Q8WXH0 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC10.04□□□□□ -0.8
SYNE2Q8WXH0 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
SYNE2Q8WXH0 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
SYNE2Q8WXH0 AL355802.2-201ENST00000402069 882 ntBASIC10.04□□□□□ -0.8
SYNE2Q8WXH0 YBX1P1-201ENST00000445822 960 ntBASIC10.04□□□□□ -0.8
SYNE2Q8WXH0 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC10.04□□□□□ -0.8
SYNE2Q8WXH0 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC10.03□□□□□ -0.8
SYNE2Q8WXH0 MAX-217ENST00000557277 728 ntTSL 3 BASIC10.03□□□□□ -0.8
SYNE2Q8WXH0 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
SYNE2Q8WXH0 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC10.03□□□□□ -0.8
SYNE2Q8WXH0 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC10.03□□□□□ -0.8
SYNE2Q8WXH0 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
SYNE2Q8WXH0 CDCA4P2-201ENST00000441182 718 ntBASIC10.03□□□□□ -0.8
SYNE2Q8WXH0 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
SYNE2Q8WXH0 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC10.03□□□□□ -0.8
SYNE2Q8WXH0 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
SYNE2Q8WXH0 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
SYNE2Q8WXH0 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC10.03□□□□□ -0.8
SYNE2Q8WXH0 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
SYNE2Q8WXH0 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC10.02□□□□□ -0.8
SYNE2Q8WXH0 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC10.02□□□□□ -0.8
SYNE2Q8WXH0 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC10.02□□□□□ -0.81
SYNE2Q8WXH0 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
SYNE2Q8WXH0 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC10.02□□□□□ -0.81
SYNE2Q8WXH0 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
SYNE2Q8WXH0 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
SYNE2Q8WXH0 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
SYNE2Q8WXH0 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC10.02□□□□□ -0.81
SYNE2Q8WXH0 PEX7-203ENST00000541292 945 ntTSL 5 BASIC10.02□□□□□ -0.81
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms