Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
SLC44A3Q8N4M1 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC24.77■■□□□ 1.56
SLC44A3Q8N4M1 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC24.77■■□□□ 1.56
SLC44A3Q8N4M1 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
SLC44A3Q8N4M1 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
SLC44A3Q8N4M1 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC24.77■■□□□ 1.56
SLC44A3Q8N4M1 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
SLC44A3Q8N4M1 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC24.76■■□□□ 1.55
SLC44A3Q8N4M1 MIR4281-201ENST00000580852 62 ntBASIC24.76■■□□□ 1.55
SLC44A3Q8N4M1 AC010997.5-201ENST00000609182 354 ntBASIC24.76■■□□□ 1.55
SLC44A3Q8N4M1 AL117332.1-201ENST00000622628 974 ntBASIC24.76■■□□□ 1.55
SLC44A3Q8N4M1 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC24.76■■□□□ 1.55
SLC44A3Q8N4M1 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC24.76■■□□□ 1.55
SLC44A3Q8N4M1 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC24.76■■□□□ 1.55
SLC44A3Q8N4M1 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC24.75■■□□□ 1.55
SLC44A3Q8N4M1 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC24.75■■□□□ 1.55
SLC44A3Q8N4M1 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC24.75■■□□□ 1.55
SLC44A3Q8N4M1 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC24.75■■□□□ 1.55
SLC44A3Q8N4M1 MIR3621-201ENST00000580529 85 ntBASIC24.75■■□□□ 1.55
SLC44A3Q8N4M1 AC110285.6-201ENST00000617652 491 ntBASIC24.75■■□□□ 1.55
SLC44A3Q8N4M1 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC24.75■■□□□ 1.55
SLC44A3Q8N4M1 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
SLC44A3Q8N4M1 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
SLC44A3Q8N4M1 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC24.74■■□□□ 1.55
SLC44A3Q8N4M1 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC24.74■■□□□ 1.55
SLC44A3Q8N4M1 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC24.74■■□□□ 1.55
SLC44A3Q8N4M1 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC24.74■■□□□ 1.55
SLC44A3Q8N4M1 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
SLC44A3Q8N4M1 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
SLC44A3Q8N4M1 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
SLC44A3Q8N4M1 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
SLC44A3Q8N4M1 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
SLC44A3Q8N4M1 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
SLC44A3Q8N4M1 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC24.73■■□□□ 1.55
SLC44A3Q8N4M1 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC24.73■■□□□ 1.55
SLC44A3Q8N4M1 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
SLC44A3Q8N4M1 AC005837.3-201ENST00000612163 286 ntBASIC24.73■■□□□ 1.55
SLC44A3Q8N4M1 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC24.73■■□□□ 1.55
SLC44A3Q8N4M1 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
SLC44A3Q8N4M1 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
SLC44A3Q8N4M1 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC24.72■■□□□ 1.55
SLC44A3Q8N4M1 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
SLC44A3Q8N4M1 MIR6724-1-201ENST00000616420 92 ntBASIC24.72■■□□□ 1.55
SLC44A3Q8N4M1 MIR6724-2-201ENST00000616483 92 ntBASIC24.72■■□□□ 1.55
SLC44A3Q8N4M1 MIR6724-4-201ENST00000617390 92 ntBASIC24.72■■□□□ 1.55
SLC44A3Q8N4M1 MIR6724-3-201ENST00000622482 92 ntBASIC24.72■■□□□ 1.55
SLC44A3Q8N4M1 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
SLC44A3Q8N4M1 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
SLC44A3Q8N4M1 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
SLC44A3Q8N4M1 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC24.71■■□□□ 1.55
SLC44A3Q8N4M1 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC24.71■■□□□ 1.55
SLC44A3Q8N4M1 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
SLC44A3Q8N4M1 BX255925.1-201ENST00000566954 1854 ntBASIC24.71■■□□□ 1.55
SLC44A3Q8N4M1 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
SLC44A3Q8N4M1 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
SLC44A3Q8N4M1 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC24.71■■□□□ 1.55
SLC44A3Q8N4M1 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC24.71■■□□□ 1.55
SLC44A3Q8N4M1 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC24.71■■□□□ 1.55
SLC44A3Q8N4M1 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
SLC44A3Q8N4M1 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
SLC44A3Q8N4M1 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
SLC44A3Q8N4M1 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
SLC44A3Q8N4M1 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
SLC44A3Q8N4M1 AL356740.2-201ENST00000601559 647 ntBASIC24.69■■□□□ 1.54
SLC44A3Q8N4M1 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC24.69■■□□□ 1.54
SLC44A3Q8N4M1 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
SLC44A3Q8N4M1 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC24.69■■□□□ 1.54
SLC44A3Q8N4M1 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
SLC44A3Q8N4M1 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC24.69■■□□□ 1.54
SLC44A3Q8N4M1 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC24.69■■□□□ 1.54
SLC44A3Q8N4M1 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC24.68■■□□□ 1.54
SLC44A3Q8N4M1 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
SLC44A3Q8N4M1 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC24.68■■□□□ 1.54
SLC44A3Q8N4M1 AC096631.2-201ENST00000436136 790 ntBASIC24.68■■□□□ 1.54
SLC44A3Q8N4M1 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC24.68■■□□□ 1.54
SLC44A3Q8N4M1 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC24.68■■□□□ 1.54
SLC44A3Q8N4M1 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC24.68■■□□□ 1.54
SLC44A3Q8N4M1 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC24.68■■□□□ 1.54
SLC44A3Q8N4M1 LSM4-201ENST00000252816 986 ntTSL 2 BASIC24.67■■□□□ 1.54
SLC44A3Q8N4M1 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC24.67■■□□□ 1.54
SLC44A3Q8N4M1 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC24.67■■□□□ 1.54
SLC44A3Q8N4M1 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC24.67■■□□□ 1.54
SLC44A3Q8N4M1 MTDHP2-201ENST00000601468 714 ntBASIC24.67■■□□□ 1.54
SLC44A3Q8N4M1 MIR4466-201ENST00000606121 54 ntBASIC24.67■■□□□ 1.54
SLC44A3Q8N4M1 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC24.67■■□□□ 1.54
SLC44A3Q8N4M1 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC24.67■■□□□ 1.54
SLC44A3Q8N4M1 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC24.66■■□□□ 1.54
SLC44A3Q8N4M1 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC24.66■■□□□ 1.54
SLC44A3Q8N4M1 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC24.66■■□□□ 1.54
SLC44A3Q8N4M1 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
SLC44A3Q8N4M1 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC24.65■■□□□ 1.54
SLC44A3Q8N4M1 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC24.64■■□□□ 1.54
SLC44A3Q8N4M1 SENP5-202ENST00000419026 973 ntTSL 3 BASIC24.64■■□□□ 1.54
SLC44A3Q8N4M1 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
SLC44A3Q8N4M1 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC24.64■■□□□ 1.54
SLC44A3Q8N4M1 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC24.64■■□□□ 1.54
SLC44A3Q8N4M1 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
SLC44A3Q8N4M1 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
SLC44A3Q8N4M1 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC24.63■■□□□ 1.53
SLC44A3Q8N4M1 EXOG-217ENST00000630638 197 ntTSL 5 BASIC24.63■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms