Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
CCDC28AQ8IWP9 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.83■□□□□ 0.77
CCDC28AQ8IWP9 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC28AQ8IWP9 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC28AQ8IWP9 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC28AQ8IWP9 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC19.83■□□□□ 0.76
CCDC28AQ8IWP9 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC28AQ8IWP9 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
CCDC28AQ8IWP9 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
CCDC28AQ8IWP9 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC19.83■□□□□ 0.76
CCDC28AQ8IWP9 AC010864.1-201ENST00000609407 1511 ntBASIC19.82■□□□□ 0.76
CCDC28AQ8IWP9 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
CCDC28AQ8IWP9 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
CCDC28AQ8IWP9 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC28AQ8IWP9 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC28AQ8IWP9 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC28AQ8IWP9 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC28AQ8IWP9 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC19.81■□□□□ 0.76
CCDC28AQ8IWP9 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC28AQ8IWP9 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
CCDC28AQ8IWP9 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC28AQ8IWP9 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC28AQ8IWP9 KLF16-203ENST00000592313 508 ntTSL 3 BASIC19.8■□□□□ 0.76
CCDC28AQ8IWP9 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
CCDC28AQ8IWP9 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC28AQ8IWP9 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC28AQ8IWP9 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC28AQ8IWP9 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC28AQ8IWP9 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC28AQ8IWP9 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC28AQ8IWP9 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC28AQ8IWP9 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC28AQ8IWP9 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC28AQ8IWP9 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC28AQ8IWP9 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC28AQ8IWP9 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
CCDC28AQ8IWP9 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.78■□□□□ 0.76
CCDC28AQ8IWP9 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC28AQ8IWP9 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC19.78■□□□□ 0.76
CCDC28AQ8IWP9 EP400NL-214ENST00000641289 2402 ntBASIC19.78■□□□□ 0.76
CCDC28AQ8IWP9 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC28AQ8IWP9 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
CCDC28AQ8IWP9 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC28AQ8IWP9 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC28AQ8IWP9 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC28AQ8IWP9 WASH5P-204ENST00000632292 975 ntBASIC19.77■□□□□ 0.76
CCDC28AQ8IWP9 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
CCDC28AQ8IWP9 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC28AQ8IWP9 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC19.77■□□□□ 0.76
CCDC28AQ8IWP9 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC28AQ8IWP9 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC28AQ8IWP9 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC19.76■□□□□ 0.75
CCDC28AQ8IWP9 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC28AQ8IWP9 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC28AQ8IWP9 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC28AQ8IWP9 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC28AQ8IWP9 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC28AQ8IWP9 AP004833.2-201ENST00000532228 1454 ntBASIC19.76■□□□□ 0.75
CCDC28AQ8IWP9 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC28AQ8IWP9 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC19.76■□□□□ 0.75
CCDC28AQ8IWP9 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC28AQ8IWP9 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC28AQ8IWP9 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC28AQ8IWP9 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC19.75■□□□□ 0.75
CCDC28AQ8IWP9 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC28AQ8IWP9 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
CCDC28AQ8IWP9 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC28AQ8IWP9 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC28AQ8IWP9 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC28AQ8IWP9 LINC01124-201ENST00000409786 2117 ntBASIC19.75■□□□□ 0.75
CCDC28AQ8IWP9 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC19.74■□□□□ 0.75
CCDC28AQ8IWP9 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CCDC28AQ8IWP9 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC28AQ8IWP9 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC28AQ8IWP9 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC28AQ8IWP9 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC28AQ8IWP9 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC19.73■□□□□ 0.75
CCDC28AQ8IWP9 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CCDC28AQ8IWP9 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC28AQ8IWP9 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC28AQ8IWP9 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC19.73■□□□□ 0.75
CCDC28AQ8IWP9 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC28AQ8IWP9 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19.73■□□□□ 0.75
CCDC28AQ8IWP9 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC28AQ8IWP9 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC28AQ8IWP9 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC28AQ8IWP9 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
CCDC28AQ8IWP9 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC28AQ8IWP9 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC28AQ8IWP9 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC28AQ8IWP9 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC28AQ8IWP9 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC19.72■□□□□ 0.75
CCDC28AQ8IWP9 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC28AQ8IWP9 AC022211.4-201ENST00000625094 2161 ntBASIC19.72■□□□□ 0.75
CCDC28AQ8IWP9 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC28AQ8IWP9 WHAMMP3-201ENST00000611636 1609 ntBASIC19.72■□□□□ 0.75
CCDC28AQ8IWP9 AC092667.1-201ENST00000434301 2586 ntBASIC19.72■□□□□ 0.75
CCDC28AQ8IWP9 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC28AQ8IWP9 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC28AQ8IWP9 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms