Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC29.77■■■□□ 2.36
CCDC88AQ3V6T2 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
CCDC88AQ3V6T2 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
CCDC88AQ3V6T2 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC29.77■■■□□ 2.36
CCDC88AQ3V6T2 AC092028.1-203ENST00000608262 953 ntBASIC29.77■■■□□ 2.36
CCDC88AQ3V6T2 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC29.77■■■□□ 2.36
CCDC88AQ3V6T2 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
CCDC88AQ3V6T2 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC29.77■■■□□ 2.36
CCDC88AQ3V6T2 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
CCDC88AQ3V6T2 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC29.76■■■□□ 2.36
CCDC88AQ3V6T2 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.36
CCDC88AQ3V6T2 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC29.76■■■□□ 2.36
CCDC88AQ3V6T2 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC29.76■■■□□ 2.36
CCDC88AQ3V6T2 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
CCDC88AQ3V6T2 ZNRF2P3-201ENST00000424200 374 ntBASIC29.76■■■□□ 2.35
CCDC88AQ3V6T2 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC29.76■■■□□ 2.35
CCDC88AQ3V6T2 AC096631.2-201ENST00000436136 790 ntBASIC29.76■■■□□ 2.35
CCDC88AQ3V6T2 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
CCDC88AQ3V6T2 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC29.74■■■□□ 2.35
CCDC88AQ3V6T2 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC29.74■■■□□ 2.35
CCDC88AQ3V6T2 RPP21-222ENST00000433076 577 ntTSL 2 BASIC29.74■■■□□ 2.35
CCDC88AQ3V6T2 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
CCDC88AQ3V6T2 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
CCDC88AQ3V6T2 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC29.74■■■□□ 2.35
CCDC88AQ3V6T2 SENP5-202ENST00000419026 973 ntTSL 3 BASIC29.74■■■□□ 2.35
CCDC88AQ3V6T2 AL512631.2-201ENST00000604634 923 ntBASIC29.74■■■□□ 2.35
CCDC88AQ3V6T2 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC29.74■■■□□ 2.35
CCDC88AQ3V6T2 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
CCDC88AQ3V6T2 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC29.73■■■□□ 2.35
CCDC88AQ3V6T2 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
CCDC88AQ3V6T2 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC29.73■■■□□ 2.35
CCDC88AQ3V6T2 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
CCDC88AQ3V6T2 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
CCDC88AQ3V6T2 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
CCDC88AQ3V6T2 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC29.72■■■□□ 2.35
CCDC88AQ3V6T2 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
CCDC88AQ3V6T2 AC026271.2-201ENST00000428091 497 ntBASIC29.72■■■□□ 2.35
CCDC88AQ3V6T2 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC29.72■■■□□ 2.35
CCDC88AQ3V6T2 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC29.72■■■□□ 2.35
CCDC88AQ3V6T2 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC29.71■■■□□ 2.35
CCDC88AQ3V6T2 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC29.71■■■□□ 2.35
CCDC88AQ3V6T2 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
CCDC88AQ3V6T2 MIR6724-1-201ENST00000616420 92 ntBASIC29.7■■■□□ 2.35
CCDC88AQ3V6T2 MIR6724-2-201ENST00000616483 92 ntBASIC29.7■■■□□ 2.35
CCDC88AQ3V6T2 MIR6724-4-201ENST00000617390 92 ntBASIC29.7■■■□□ 2.35
CCDC88AQ3V6T2 MIR6724-3-201ENST00000622482 92 ntBASIC29.7■■■□□ 2.35
CCDC88AQ3V6T2 AL449106.1-201ENST00000608517 1980 ntBASIC29.7■■■□□ 2.35
CCDC88AQ3V6T2 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
CCDC88AQ3V6T2 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC29.7■■■□□ 2.35
CCDC88AQ3V6T2 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC29.7■■■□□ 2.34
CCDC88AQ3V6T2 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC29.7■■■□□ 2.34
CCDC88AQ3V6T2 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC29.7■■■□□ 2.34
CCDC88AQ3V6T2 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC29.69■■■□□ 2.34
CCDC88AQ3V6T2 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC29.69■■■□□ 2.34
CCDC88AQ3V6T2 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC29.69■■■□□ 2.34
CCDC88AQ3V6T2 GUK1-205ENST00000366722 850 ntTSL 3 BASIC29.68■■■□□ 2.34
CCDC88AQ3V6T2 MIR3621-201ENST00000580529 85 ntBASIC29.68■■■□□ 2.34
CCDC88AQ3V6T2 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC29.67■■■□□ 2.34
CCDC88AQ3V6T2 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
CCDC88AQ3V6T2 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC29.67■■■□□ 2.34
CCDC88AQ3V6T2 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
CCDC88AQ3V6T2 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC29.66■■■□□ 2.34
CCDC88AQ3V6T2 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
CCDC88AQ3V6T2 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC29.66■■■□□ 2.34
CCDC88AQ3V6T2 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC29.66■■■□□ 2.34
CCDC88AQ3V6T2 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC29.66■■■□□ 2.34
CCDC88AQ3V6T2 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
CCDC88AQ3V6T2 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC29.65■■■□□ 2.34
CCDC88AQ3V6T2 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC29.65■■■□□ 2.34
CCDC88AQ3V6T2 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC29.65■■■□□ 2.34
CCDC88AQ3V6T2 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
CCDC88AQ3V6T2 SUDS3P1-201ENST00000505831 966 ntBASIC29.65■■■□□ 2.34
CCDC88AQ3V6T2 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC29.65■■■□□ 2.34
CCDC88AQ3V6T2 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
CCDC88AQ3V6T2 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC29.64■■■□□ 2.34
CCDC88AQ3V6T2 BX255925.1-201ENST00000566954 1854 ntBASIC29.64■■■□□ 2.34
CCDC88AQ3V6T2 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
CCDC88AQ3V6T2 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC29.64■■■□□ 2.34
CCDC88AQ3V6T2 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
CCDC88AQ3V6T2 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
CCDC88AQ3V6T2 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
CCDC88AQ3V6T2 AC120024.1-201ENST00000562672 995 ntBASIC29.63■■■□□ 2.33
CCDC88AQ3V6T2 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC29.62■■■□□ 2.33
CCDC88AQ3V6T2 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
CCDC88AQ3V6T2 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC29.62■■■□□ 2.33
CCDC88AQ3V6T2 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
CCDC88AQ3V6T2 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
CCDC88AQ3V6T2 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC29.62■■■□□ 2.33
CCDC88AQ3V6T2 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC29.61■■■□□ 2.33
CCDC88AQ3V6T2 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC29.61■■■□□ 2.33
CCDC88AQ3V6T2 AC005837.3-201ENST00000612163 286 ntBASIC29.61■■■□□ 2.33
CCDC88AQ3V6T2 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
CCDC88AQ3V6T2 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
CCDC88AQ3V6T2 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
CCDC88AQ3V6T2 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
CCDC88AQ3V6T2 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC29.6■■■□□ 2.33
CCDC88AQ3V6T2 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
CCDC88AQ3V6T2 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC29.6■■■□□ 2.33
CCDC88AQ3V6T2 KRT18P10-201ENST00000388836 1287 ntBASIC29.59■■■□□ 2.33
CCDC88AQ3V6T2 AC104564.3-201ENST00000582367 638 ntBASIC29.59■■■□□ 2.33
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms