Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC26.81■■□□□ 1.88
NKX3-2P78367 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
NKX3-2P78367 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC26.81■■□□□ 1.88
NKX3-2P78367 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC26.81■■□□□ 1.88
NKX3-2P78367 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC26.81■■□□□ 1.88
NKX3-2P78367 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC26.81■■□□□ 1.88
NKX3-2P78367 MIR4281-201ENST00000580852 62 ntBASIC26.81■■□□□ 1.88
NKX3-2P78367 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC26.81■■□□□ 1.88
NKX3-2P78367 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC26.8■■□□□ 1.88
NKX3-2P78367 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC26.8■■□□□ 1.88
NKX3-2P78367 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC26.8■■□□□ 1.88
NKX3-2P78367 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
NKX3-2P78367 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
NKX3-2P78367 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC26.79■■□□□ 1.88
NKX3-2P78367 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
NKX3-2P78367 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
NKX3-2P78367 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
NKX3-2P78367 MIR638-201ENST00000385237 100 ntBASIC26.78■■□□□ 1.88
NKX3-2P78367 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC26.78■■□□□ 1.88
NKX3-2P78367 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC26.78■■□□□ 1.88
NKX3-2P78367 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC26.78■■□□□ 1.88
NKX3-2P78367 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
NKX3-2P78367 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
NKX3-2P78367 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
NKX3-2P78367 TSPY9P-201ENST00000440215 945 ntBASIC26.77■■□□□ 1.88
NKX3-2P78367 TSPY11P-201ENST00000442607 1045 ntBASIC26.77■■□□□ 1.88
NKX3-2P78367 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC26.76■■□□□ 1.88
NKX3-2P78367 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC26.76■■□□□ 1.87
NKX3-2P78367 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC26.76■■□□□ 1.87
NKX3-2P78367 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
NKX3-2P78367 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC26.76■■□□□ 1.87
NKX3-2P78367 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
NKX3-2P78367 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC26.75■■□□□ 1.87
NKX3-2P78367 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
NKX3-2P78367 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC26.75■■□□□ 1.87
NKX3-2P78367 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC26.75■■□□□ 1.87
NKX3-2P78367 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
NKX3-2P78367 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
NKX3-2P78367 AC131281.2-201ENST00000520478 145 ntBASIC26.74■■□□□ 1.87
NKX3-2P78367 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC26.74■■□□□ 1.87
NKX3-2P78367 AC011551.1-201ENST00000614101 683 ntBASIC26.74■■□□□ 1.87
NKX3-2P78367 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC26.74■■□□□ 1.87
NKX3-2P78367 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC26.74■■□□□ 1.87
NKX3-2P78367 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC26.73■■□□□ 1.87
NKX3-2P78367 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC26.73■■□□□ 1.87
NKX3-2P78367 RPP21-222ENST00000433076 577 ntTSL 2 BASIC26.73■■□□□ 1.87
NKX3-2P78367 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC26.73■■□□□ 1.87
NKX3-2P78367 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
NKX3-2P78367 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
NKX3-2P78367 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
NKX3-2P78367 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
NKX3-2P78367 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC26.72■■□□□ 1.87
NKX3-2P78367 AL139246.5-201ENST00000606645 996 ntBASIC26.72■■□□□ 1.87
NKX3-2P78367 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC26.72■■□□□ 1.87
NKX3-2P78367 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC26.72■■□□□ 1.87
NKX3-2P78367 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
NKX3-2P78367 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
NKX3-2P78367 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC26.71■■□□□ 1.87
NKX3-2P78367 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC26.71■■□□□ 1.87
NKX3-2P78367 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC26.71■■□□□ 1.87
NKX3-2P78367 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC26.71■■□□□ 1.87
NKX3-2P78367 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
NKX3-2P78367 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
NKX3-2P78367 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC26.7■■□□□ 1.86
NKX3-2P78367 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
NKX3-2P78367 MIR935-201ENST00000401179 91 ntBASIC26.7■■□□□ 1.86
NKX3-2P78367 MIR3621-201ENST00000580529 85 ntBASIC26.7■■□□□ 1.86
NKX3-2P78367 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
NKX3-2P78367 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC26.7■■□□□ 1.86
NKX3-2P78367 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC26.7■■□□□ 1.86
NKX3-2P78367 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC26.69■■□□□ 1.86
NKX3-2P78367 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
NKX3-2P78367 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.86
NKX3-2P78367 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC26.69■■□□□ 1.86
NKX3-2P78367 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
NKX3-2P78367 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC26.69■■□□□ 1.86
NKX3-2P78367 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC26.69■■□□□ 1.86
NKX3-2P78367 AL117332.1-201ENST00000622628 974 ntBASIC26.69■■□□□ 1.86
NKX3-2P78367 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC26.69■■□□□ 1.86
NKX3-2P78367 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC26.68■■□□□ 1.86
NKX3-2P78367 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC26.68■■□□□ 1.86
NKX3-2P78367 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC26.68■■□□□ 1.86
NKX3-2P78367 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC26.67■■□□□ 1.86
NKX3-2P78367 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC26.67■■□□□ 1.86
NKX3-2P78367 SENP5-202ENST00000419026 973 ntTSL 3 BASIC26.67■■□□□ 1.86
NKX3-2P78367 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC26.67■■□□□ 1.86
NKX3-2P78367 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC26.67■■□□□ 1.86
NKX3-2P78367 SRR-208ENST00000576848 588 ntTSL 4 BASIC26.67■■□□□ 1.86
NKX3-2P78367 AC010997.5-201ENST00000609182 354 ntBASIC26.67■■□□□ 1.86
NKX3-2P78367 MIR6724-1-201ENST00000616420 92 ntBASIC26.67■■□□□ 1.86
NKX3-2P78367 MIR6724-2-201ENST00000616483 92 ntBASIC26.67■■□□□ 1.86
NKX3-2P78367 MIR6724-4-201ENST00000617390 92 ntBASIC26.67■■□□□ 1.86
NKX3-2P78367 MIR6724-3-201ENST00000622482 92 ntBASIC26.67■■□□□ 1.86
NKX3-2P78367 AP004609.3-201ENST00000610705 1884 ntBASIC26.67■■□□□ 1.86
NKX3-2P78367 TRIR-202ENST00000588213 841 ntTSL 3 BASIC26.66■■□□□ 1.86
NKX3-2P78367 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
NKX3-2P78367 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC26.66■■□□□ 1.86
NKX3-2P78367 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC26.65■■□□□ 1.86
NKX3-2P78367 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
NKX3-2P78367 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms