Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CXCL12P48061 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC24.18■■□□□ 1.46
CXCL12P48061 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC24.18■■□□□ 1.46
CXCL12P48061 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CXCL12P48061 MTDHP2-201ENST00000601468 714 ntBASIC24.18■■□□□ 1.46
CXCL12P48061 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
CXCL12P48061 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC24.18■■□□□ 1.46
CXCL12P48061 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
CXCL12P48061 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CXCL12P48061 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
CXCL12P48061 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
CXCL12P48061 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
CXCL12P48061 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC24.17■■□□□ 1.46
CXCL12P48061 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC24.17■■□□□ 1.46
CXCL12P48061 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
CXCL12P48061 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
CXCL12P48061 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC24.16■■□□□ 1.46
CXCL12P48061 AC096631.2-201ENST00000436136 790 ntBASIC24.16■■□□□ 1.46
CXCL12P48061 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
CXCL12P48061 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
CXCL12P48061 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
CXCL12P48061 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC24.14■■□□□ 1.46
CXCL12P48061 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CXCL12P48061 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.45
CXCL12P48061 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC24.14■■□□□ 1.45
CXCL12P48061 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC24.14■■□□□ 1.45
CXCL12P48061 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
CXCL12P48061 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
CXCL12P48061 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC24.14■■□□□ 1.45
CXCL12P48061 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC24.14■■□□□ 1.45
CXCL12P48061 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CXCL12P48061 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CXCL12P48061 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CXCL12P48061 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CXCL12P48061 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CXCL12P48061 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC24.13■■□□□ 1.45
CXCL12P48061 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC24.13■■□□□ 1.45
CXCL12P48061 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC24.13■■□□□ 1.45
CXCL12P48061 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
CXCL12P48061 LSM4-201ENST00000252816 986 ntTSL 2 BASIC24.12■■□□□ 1.45
CXCL12P48061 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC24.12■■□□□ 1.45
CXCL12P48061 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC24.12■■□□□ 1.45
CXCL12P48061 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
CXCL12P48061 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC24.12■■□□□ 1.45
CXCL12P48061 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
CXCL12P48061 BX255925.1-201ENST00000566954 1854 ntBASIC24.12■■□□□ 1.45
CXCL12P48061 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CXCL12P48061 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC24.12■■□□□ 1.45
CXCL12P48061 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC24.12■■□□□ 1.45
CXCL12P48061 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
CXCL12P48061 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC24.11■■□□□ 1.45
CXCL12P48061 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC24.11■■□□□ 1.45
CXCL12P48061 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC24.11■■□□□ 1.45
CXCL12P48061 AC133561.4-201ENST00000566112 224 ntBASIC24.11■■□□□ 1.45
CXCL12P48061 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC24.11■■□□□ 1.45
CXCL12P48061 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC24.11■■□□□ 1.45
CXCL12P48061 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
CXCL12P48061 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
CXCL12P48061 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC24.1■■□□□ 1.45
CXCL12P48061 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC24.1■■□□□ 1.45
CXCL12P48061 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC24.1■■□□□ 1.45
CXCL12P48061 MIR4466-201ENST00000606121 54 ntBASIC24.1■■□□□ 1.45
CXCL12P48061 EXOG-217ENST00000630638 197 ntTSL 5 BASIC24.1■■□□□ 1.45
CXCL12P48061 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC24.1■■□□□ 1.45
CXCL12P48061 ABCB10P1-201ENST00000614297 2181 ntBASIC24.09■■□□□ 1.45
CXCL12P48061 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC24.09■■□□□ 1.45
CXCL12P48061 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC24.09■■□□□ 1.45
CXCL12P48061 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC24.09■■□□□ 1.45
CXCL12P48061 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC24.09■■□□□ 1.45
CXCL12P48061 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
CXCL12P48061 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
CXCL12P48061 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC24.08■■□□□ 1.45
CXCL12P48061 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC24.08■■□□□ 1.45
CXCL12P48061 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
CXCL12P48061 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
CXCL12P48061 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC24.08■■□□□ 1.44
CXCL12P48061 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC24.07■■□□□ 1.44
CXCL12P48061 SENP5-202ENST00000419026 973 ntTSL 3 BASIC24.07■■□□□ 1.44
CXCL12P48061 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC24.07■■□□□ 1.44
CXCL12P48061 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC24.07■■□□□ 1.44
CXCL12P48061 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC24.06■■□□□ 1.44
CXCL12P48061 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
CXCL12P48061 TK2-202ENST00000417693 1046 ntTSL 2 BASIC24.06■■□□□ 1.44
CXCL12P48061 AK3-203ENST00000447596 705 ntTSL 2 BASIC24.06■■□□□ 1.44
CXCL12P48061 AC011551.1-201ENST00000614101 683 ntBASIC24.06■■□□□ 1.44
CXCL12P48061 GAK-223ENST00000628912 497 ntTSL 5 BASIC24.06■■□□□ 1.44
CXCL12P48061 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC24.06■■□□□ 1.44
CXCL12P48061 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC24.06■■□□□ 1.44
CXCL12P48061 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
CXCL12P48061 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
CXCL12P48061 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC24.04■■□□□ 1.44
CXCL12P48061 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC24.04■■□□□ 1.44
CXCL12P48061 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC24.04■■□□□ 1.44
CXCL12P48061 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
CXCL12P48061 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC24.04■■□□□ 1.44
CXCL12P48061 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
CXCL12P48061 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC24.03■■□□□ 1.44
CXCL12P48061 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC24.03■■□□□ 1.44
CXCL12P48061 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
CXCL12P48061 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC24.03■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms