Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 RALB-208ENST00000631312 311 ntTSL 5 BASIC32.09■■■□□ 2.73
CSB-PGBD3P0DP91 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
CSB-PGBD3P0DP91 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
CSB-PGBD3P0DP91 RPP21-222ENST00000433076 577 ntTSL 2 BASIC32.08■■■□□ 2.73
CSB-PGBD3P0DP91 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC32.08■■■□□ 2.73
CSB-PGBD3P0DP91 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC32.08■■■□□ 2.73
CSB-PGBD3P0DP91 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC32.08■■■□□ 2.73
CSB-PGBD3P0DP91 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC32.08■■■□□ 2.73
CSB-PGBD3P0DP91 LINC01003-201ENST00000564834 1764 ntBASIC32.08■■■□□ 2.73
CSB-PGBD3P0DP91 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC32.08■■■□□ 2.73
CSB-PGBD3P0DP91 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC32.07■■■□□ 2.72
CSB-PGBD3P0DP91 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC32.07■■■□□ 2.72
CSB-PGBD3P0DP91 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC32.07■■■□□ 2.72
CSB-PGBD3P0DP91 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
CSB-PGBD3P0DP91 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC32.07■■■□□ 2.72
CSB-PGBD3P0DP91 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
CSB-PGBD3P0DP91 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC32.07■■■□□ 2.72
CSB-PGBD3P0DP91 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC32.07■■■□□ 2.72
CSB-PGBD3P0DP91 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
CSB-PGBD3P0DP91 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC32.06■■■□□ 2.72
CSB-PGBD3P0DP91 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC32.06■■■□□ 2.72
CSB-PGBD3P0DP91 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
CSB-PGBD3P0DP91 MIR4281-201ENST00000580852 62 ntBASIC32.06■■■□□ 2.72
CSB-PGBD3P0DP91 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC32.06■■■□□ 2.72
CSB-PGBD3P0DP91 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
CSB-PGBD3P0DP91 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC32.05■■■□□ 2.72
CSB-PGBD3P0DP91 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
CSB-PGBD3P0DP91 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
CSB-PGBD3P0DP91 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC32.05■■■□□ 2.72
CSB-PGBD3P0DP91 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
CSB-PGBD3P0DP91 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
CSB-PGBD3P0DP91 AL136116.3-201ENST00000402907 1138 ntBASIC32.04■■■□□ 2.72
CSB-PGBD3P0DP91 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC32.04■■■□□ 2.72
CSB-PGBD3P0DP91 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC32.04■■■□□ 2.72
CSB-PGBD3P0DP91 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC32.03■■■□□ 2.72
CSB-PGBD3P0DP91 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
CSB-PGBD3P0DP91 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
CSB-PGBD3P0DP91 AC139426.1-201ENST00000568218 2529 ntBASIC32.01■■■□□ 2.72
CSB-PGBD3P0DP91 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC32.01■■■□□ 2.72
CSB-PGBD3P0DP91 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC32.01■■■□□ 2.71
CSB-PGBD3P0DP91 AC010997.5-201ENST00000609182 354 ntBASIC32.01■■■□□ 2.71
CSB-PGBD3P0DP91 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
CSB-PGBD3P0DP91 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC32■■■□□ 2.71
CSB-PGBD3P0DP91 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC32■■■□□ 2.71
CSB-PGBD3P0DP91 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
CSB-PGBD3P0DP91 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC32■■■□□ 2.71
CSB-PGBD3P0DP91 ST7-202ENST00000323984 2142 ntTSL 5 BASIC32■■■□□ 2.71
CSB-PGBD3P0DP91 ST7-207ENST00000393449 2127 ntTSL 5 BASIC32■■■□□ 2.71
CSB-PGBD3P0DP91 AC142472.1-201ENST00000612013 1741 ntBASIC32■■■□□ 2.71
CSB-PGBD3P0DP91 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC31.99■■■□□ 2.71
CSB-PGBD3P0DP91 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC31.99■■■□□ 2.71
CSB-PGBD3P0DP91 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC31.99■■■□□ 2.71
CSB-PGBD3P0DP91 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
CSB-PGBD3P0DP91 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC31.99■■■□□ 2.71
CSB-PGBD3P0DP91 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
CSB-PGBD3P0DP91 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC31.98■■■□□ 2.71
CSB-PGBD3P0DP91 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
CSB-PGBD3P0DP91 AL117332.1-201ENST00000622628 974 ntBASIC31.98■■■□□ 2.71
CSB-PGBD3P0DP91 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC31.98■■■□□ 2.71
CSB-PGBD3P0DP91 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC31.98■■■□□ 2.71
CSB-PGBD3P0DP91 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC31.97■■■□□ 2.71
CSB-PGBD3P0DP91 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC31.97■■■□□ 2.71
CSB-PGBD3P0DP91 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC31.97■■■□□ 2.71
CSB-PGBD3P0DP91 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
CSB-PGBD3P0DP91 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC31.96■■■□□ 2.71
CSB-PGBD3P0DP91 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC31.96■■■□□ 2.71
CSB-PGBD3P0DP91 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC31.96■■■□□ 2.71
CSB-PGBD3P0DP91 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC31.95■■■□□ 2.71
CSB-PGBD3P0DP91 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC31.95■■■□□ 2.71
CSB-PGBD3P0DP91 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC31.95■■■□□ 2.71
CSB-PGBD3P0DP91 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC31.95■■■□□ 2.71
CSB-PGBD3P0DP91 MTDHP2-201ENST00000601468 714 ntBASIC31.95■■■□□ 2.71
CSB-PGBD3P0DP91 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
CSB-PGBD3P0DP91 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC31.95■■■□□ 2.7
CSB-PGBD3P0DP91 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
CSB-PGBD3P0DP91 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
CSB-PGBD3P0DP91 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
CSB-PGBD3P0DP91 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
CSB-PGBD3P0DP91 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC31.94■■■□□ 2.7
CSB-PGBD3P0DP91 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
CSB-PGBD3P0DP91 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC31.94■■■□□ 2.7
CSB-PGBD3P0DP91 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC31.94■■■□□ 2.7
CSB-PGBD3P0DP91 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC31.93■■■□□ 2.7
CSB-PGBD3P0DP91 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
CSB-PGBD3P0DP91 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC31.92■■■□□ 2.7
CSB-PGBD3P0DP91 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC31.92■■■□□ 2.7
CSB-PGBD3P0DP91 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC31.92■■■□□ 2.7
CSB-PGBD3P0DP91 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
CSB-PGBD3P0DP91 MIR6724-1-201ENST00000616420 92 ntBASIC31.92■■■□□ 2.7
CSB-PGBD3P0DP91 MIR6724-2-201ENST00000616483 92 ntBASIC31.92■■■□□ 2.7
CSB-PGBD3P0DP91 MIR6724-4-201ENST00000617390 92 ntBASIC31.92■■■□□ 2.7
CSB-PGBD3P0DP91 MIR6724-3-201ENST00000622482 92 ntBASIC31.92■■■□□ 2.7
CSB-PGBD3P0DP91 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC31.92■■■□□ 2.7
CSB-PGBD3P0DP91 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC31.91■■■□□ 2.7
CSB-PGBD3P0DP91 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
CSB-PGBD3P0DP91 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC31.91■■■□□ 2.7
CSB-PGBD3P0DP91 MIR3621-201ENST00000580529 85 ntBASIC31.91■■■□□ 2.7
CSB-PGBD3P0DP91 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC31.91■■■□□ 2.7
CSB-PGBD3P0DP91 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC31.91■■■□□ 2.7
CSB-PGBD3P0DP91 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
Retrieved 100 of 98,524 protein–RNA pairs in 10.1 ms