Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC24.46■■□□□ 1.51
CBX4O00257 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC24.46■■□□□ 1.51
CBX4O00257 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC24.46■■□□□ 1.51
CBX4O00257 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CBX4O00257 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
CBX4O00257 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC24.45■■□□□ 1.51
CBX4O00257 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
CBX4O00257 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.5
CBX4O00257 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
CBX4O00257 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC24.45■■□□□ 1.5
CBX4O00257 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC24.44■■□□□ 1.5
CBX4O00257 AC074183.2-201ENST00000623112 922 ntBASIC24.44■■□□□ 1.5
CBX4O00257 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC24.44■■□□□ 1.5
CBX4O00257 SNAI3-AS1-204ENST00000567997 2048 ntBASIC24.44■■□□□ 1.5
CBX4O00257 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CBX4O00257 AC010501.1-201ENST00000606270 1962 ntBASIC24.43■■□□□ 1.5
CBX4O00257 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
CBX4O00257 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
CBX4O00257 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CBX4O00257 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC24.43■■□□□ 1.5
CBX4O00257 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
CBX4O00257 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC24.43■■□□□ 1.5
CBX4O00257 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CBX4O00257 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CBX4O00257 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CBX4O00257 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
CBX4O00257 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
CBX4O00257 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
CBX4O00257 AC096887.2-201ENST00000623443 1957 ntBASIC24.42■■□□□ 1.5
CBX4O00257 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CBX4O00257 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
CBX4O00257 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
CBX4O00257 BEX3-202ENST00000372634 753 ntTSL 2 BASIC24.41■■□□□ 1.5
CBX4O00257 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC24.41■■□□□ 1.5
CBX4O00257 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
CBX4O00257 AC091060.1-201ENST00000623524 1766 ntBASIC24.41■■□□□ 1.5
CBX4O00257 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC24.41■■□□□ 1.5
CBX4O00257 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC24.41■■□□□ 1.5
CBX4O00257 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CBX4O00257 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC24.4■■□□□ 1.5
CBX4O00257 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC24.4■■□□□ 1.5
CBX4O00257 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
CBX4O00257 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC24.4■■□□□ 1.5
CBX4O00257 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC24.4■■□□□ 1.5
CBX4O00257 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
CBX4O00257 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
CBX4O00257 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.49
CBX4O00257 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CBX4O00257 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CBX4O00257 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC24.38■■□□□ 1.49
CBX4O00257 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC24.38■■□□□ 1.49
CBX4O00257 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC24.38■■□□□ 1.49
CBX4O00257 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
CBX4O00257 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC24.38■■□□□ 1.49
CBX4O00257 PVT1_1.1-201ENST00000615125 194 ntBASIC24.38■■□□□ 1.49
CBX4O00257 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC24.38■■□□□ 1.49
CBX4O00257 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC24.38■■□□□ 1.49
CBX4O00257 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC24.38■■□□□ 1.49
CBX4O00257 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
CBX4O00257 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC24.37■■□□□ 1.49
CBX4O00257 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
CBX4O00257 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC24.37■■□□□ 1.49
CBX4O00257 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
CBX4O00257 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
CBX4O00257 KRT8P33-201ENST00000508125 1423 ntBASIC24.36■■□□□ 1.49
CBX4O00257 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
CBX4O00257 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC24.36■■□□□ 1.49
CBX4O00257 LONRF2P2-201ENST00000439212 571 ntBASIC24.36■■□□□ 1.49
CBX4O00257 MTX2-204ENST00000443241 799 ntTSL 3 BASIC24.36■■□□□ 1.49
CBX4O00257 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC24.36■■□□□ 1.49
CBX4O00257 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
CBX4O00257 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC24.35■■□□□ 1.49
CBX4O00257 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
CBX4O00257 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC24.35■■□□□ 1.49
CBX4O00257 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC24.35■■□□□ 1.49
CBX4O00257 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CBX4O00257 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CBX4O00257 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC24.34■■□□□ 1.49
CBX4O00257 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CBX4O00257 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
CBX4O00257 AC145676.1-201ENST00000514988 2004 ntBASIC24.34■■□□□ 1.49
CBX4O00257 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CBX4O00257 AL451085.2-201ENST00000605085 799 ntBASIC24.34■■□□□ 1.49
CBX4O00257 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CBX4O00257 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC24.34■■□□□ 1.49
CBX4O00257 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
CBX4O00257 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CBX4O00257 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
CBX4O00257 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC24.33■■□□□ 1.49
CBX4O00257 IDNK-201ENST00000376417 511 ntTSL 5 BASIC24.33■■□□□ 1.49
CBX4O00257 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CBX4O00257 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC24.33■■□□□ 1.49
CBX4O00257 DUSP8P4-201ENST00000399538 1761 ntBASIC24.33■■□□□ 1.49
CBX4O00257 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.48
CBX4O00257 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
CBX4O00257 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
CBX4O00257 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC24.32■■□□□ 1.48
CBX4O00257 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CBX4O00257 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC24.32■■□□□ 1.48
CBX4O00257 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC24.32■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms