Protein–RNA interactions for Protein: A6NCS4

NKX2-6, Homeobox protein Nkx-2.6, humanhuman

Predictions only

Length 301 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-6A6NCS4 MIR4787-201ENST00000607364 84 ntBASIC21.26■□□□□ 0.99
NKX2-6A6NCS4 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
NKX2-6A6NCS4 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NKX2-6A6NCS4 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NKX2-6A6NCS4 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NKX2-6A6NCS4 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NKX2-6A6NCS4 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NKX2-6A6NCS4 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NKX2-6A6NCS4 BX664725.1-201ENST00000438252 379 ntBASIC21.25■□□□□ 0.99
NKX2-6A6NCS4 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC21.25■□□□□ 0.99
NKX2-6A6NCS4 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NKX2-6A6NCS4 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NKX2-6A6NCS4 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
NKX2-6A6NCS4 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NKX2-6A6NCS4 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NKX2-6A6NCS4 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
NKX2-6A6NCS4 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
NKX2-6A6NCS4 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
NKX2-6A6NCS4 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NKX2-6A6NCS4 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC21.24■□□□□ 0.99
NKX2-6A6NCS4 CREM-210ENST00000374721 2020 ntTSL 5 BASIC21.23■□□□□ 0.99
NKX2-6A6NCS4 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NKX2-6A6NCS4 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
NKX2-6A6NCS4 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
NKX2-6A6NCS4 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NKX2-6A6NCS4 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
NKX2-6A6NCS4 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NKX2-6A6NCS4 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NKX2-6A6NCS4 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
NKX2-6A6NCS4 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
NKX2-6A6NCS4 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC21.22■□□□□ 0.99
NKX2-6A6NCS4 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NKX2-6A6NCS4 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC21.22■□□□□ 0.99
NKX2-6A6NCS4 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
NKX2-6A6NCS4 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC21.22■□□□□ 0.99
NKX2-6A6NCS4 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NKX2-6A6NCS4 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
NKX2-6A6NCS4 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NKX2-6A6NCS4 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC21.21■□□□□ 0.99
NKX2-6A6NCS4 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.21■□□□□ 0.99
NKX2-6A6NCS4 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NKX2-6A6NCS4 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
NKX2-6A6NCS4 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
NKX2-6A6NCS4 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NKX2-6A6NCS4 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC21.2■□□□□ 0.98
NKX2-6A6NCS4 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.2■□□□□ 0.98
NKX2-6A6NCS4 AC022616.5-201ENST00000518796 181 ntBASIC21.2■□□□□ 0.98
NKX2-6A6NCS4 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NKX2-6A6NCS4 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
NKX2-6A6NCS4 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NKX2-6A6NCS4 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.2■□□□□ 0.98
NKX2-6A6NCS4 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NKX2-6A6NCS4 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NKX2-6A6NCS4 KRT18P10-201ENST00000388836 1287 ntBASIC21.19■□□□□ 0.98
NKX2-6A6NCS4 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NKX2-6A6NCS4 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
NKX2-6A6NCS4 UNC93B8-201ENST00000511903 705 ntBASIC21.19■□□□□ 0.98
NKX2-6A6NCS4 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.19■□□□□ 0.98
NKX2-6A6NCS4 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NKX2-6A6NCS4 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
NKX2-6A6NCS4 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NKX2-6A6NCS4 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
NKX2-6A6NCS4 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NKX2-6A6NCS4 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.18■□□□□ 0.98
NKX2-6A6NCS4 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC21.18■□□□□ 0.98
NKX2-6A6NCS4 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC21.17■□□□□ 0.98
NKX2-6A6NCS4 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC21.17■□□□□ 0.98
NKX2-6A6NCS4 KRT16P3-201ENST00000439127 1283 ntBASIC21.17■□□□□ 0.98
NKX2-6A6NCS4 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.17■□□□□ 0.98
NKX2-6A6NCS4 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC21.17■□□□□ 0.98
NKX2-6A6NCS4 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.17■□□□□ 0.98
NKX2-6A6NCS4 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC21.17■□□□□ 0.98
NKX2-6A6NCS4 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.17■□□□□ 0.98
NKX2-6A6NCS4 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NKX2-6A6NCS4 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NKX2-6A6NCS4 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
NKX2-6A6NCS4 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC21.16■□□□□ 0.98
NKX2-6A6NCS4 KRT18P24-201ENST00000344739 1156 ntBASIC21.16■□□□□ 0.98
NKX2-6A6NCS4 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NKX2-6A6NCS4 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
NKX2-6A6NCS4 TSPY9P-201ENST00000440215 945 ntBASIC21.16■□□□□ 0.98
NKX2-6A6NCS4 TSPY11P-201ENST00000442607 1045 ntBASIC21.16■□□□□ 0.98
NKX2-6A6NCS4 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NKX2-6A6NCS4 SHF-207ENST00000560540 2062 ntTSL 5 BASIC21.16■□□□□ 0.98
NKX2-6A6NCS4 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
NKX2-6A6NCS4 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NKX2-6A6NCS4 LINC01003-201ENST00000564834 1764 ntBASIC21.15■□□□□ 0.98
NKX2-6A6NCS4 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NKX2-6A6NCS4 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NKX2-6A6NCS4 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NKX2-6A6NCS4 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NKX2-6A6NCS4 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
NKX2-6A6NCS4 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC21.14■□□□□ 0.98
NKX2-6A6NCS4 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
NKX2-6A6NCS4 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
NKX2-6A6NCS4 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
NKX2-6A6NCS4 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NKX2-6A6NCS4 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
NKX2-6A6NCS4 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
NKX2-6A6NCS4 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 8.4 ms