Protein–RNA interactions for Protein: Q9Y3T6

R3HCC1, R3H and coiled-coil domain-containing protein 1, humanhuman

Known RBP Predictions only

Length 440 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
R3HCC1Q9Y3T6 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
R3HCC1Q9Y3T6 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
R3HCC1Q9Y3T6 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
R3HCC1Q9Y3T6 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
R3HCC1Q9Y3T6 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
R3HCC1Q9Y3T6 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
R3HCC1Q9Y3T6 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
R3HCC1Q9Y3T6 AL845331.1-201ENST00000424978 1190 ntBASIC19.22■□□□□ 0.67
R3HCC1Q9Y3T6 IGHV3-47-201ENST00000425060 335 ntBASIC19.22■□□□□ 0.67
R3HCC1Q9Y3T6 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC19.22■□□□□ 0.67
R3HCC1Q9Y3T6 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC19.22■□□□□ 0.67
R3HCC1Q9Y3T6 FOSL1P1-201ENST00000511041 816 ntBASIC19.22■□□□□ 0.67
R3HCC1Q9Y3T6 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC19.22■□□□□ 0.67
R3HCC1Q9Y3T6 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC19.22■□□□□ 0.67
R3HCC1Q9Y3T6 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC19.22■□□□□ 0.67
R3HCC1Q9Y3T6 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC19.22■□□□□ 0.67
R3HCC1Q9Y3T6 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC19.22■□□□□ 0.67
R3HCC1Q9Y3T6 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
R3HCC1Q9Y3T6 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
R3HCC1Q9Y3T6 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
R3HCC1Q9Y3T6 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
R3HCC1Q9Y3T6 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
R3HCC1Q9Y3T6 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
R3HCC1Q9Y3T6 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
R3HCC1Q9Y3T6 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
R3HCC1Q9Y3T6 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
R3HCC1Q9Y3T6 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
R3HCC1Q9Y3T6 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 AP005901.3-202ENST00000581653 237 ntBASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
R3HCC1Q9Y3T6 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 AC125634.1-201ENST00000438758 1403 ntBASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 NUS1P2-201ENST00000417358 873 ntBASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 AC091607.1-201ENST00000490318 1060 ntBASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 CDV3-207ENST00000508481 661 ntTSL 3 BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 AC091304.2-201ENST00000564639 760 ntBASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 MED29-202ENST00000594368 1471 ntTSL 2 BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 AC097374.2-201ENST00000618617 1306 ntBASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
R3HCC1Q9Y3T6 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms