Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AC073621.1-201ENST00000392730 636 ntBASIC15.11■□□□□ 0.01
HIF3AQ9Y2N7 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC15.11■□□□□ 0.01
HIF3AQ9Y2N7 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC15.11■□□□□ 0.01
HIF3AQ9Y2N7 RPS15P9-201ENST00000494093 319 ntBASIC15.11■□□□□ 0.01
HIF3AQ9Y2N7 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC15.11■□□□□ 0.01
HIF3AQ9Y2N7 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC15.11■□□□□ 0.01
HIF3AQ9Y2N7 ETFA-208ENST00000559602 792 ntTSL 3 BASIC15.11■□□□□ 0.01
HIF3AQ9Y2N7 GGTLC5P-201ENST00000617623 998 ntBASIC15.11■□□□□ 0.01
HIF3AQ9Y2N7 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
HIF3AQ9Y2N7 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC15.11■□□□□ 0.01
HIF3AQ9Y2N7 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HIF3AQ9Y2N7 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HIF3AQ9Y2N7 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC15.11■□□□□ 0.01
HIF3AQ9Y2N7 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC15.11■□□□□ 0.01
HIF3AQ9Y2N7 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HIF3AQ9Y2N7 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC15.11■□□□□ 0.01
HIF3AQ9Y2N7 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC15.11■□□□□ 0.01
HIF3AQ9Y2N7 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HIF3AQ9Y2N7 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC15.11■□□□□ 0.01
HIF3AQ9Y2N7 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
HIF3AQ9Y2N7 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC15.11■□□□□ 0.01
HIF3AQ9Y2N7 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HIF3AQ9Y2N7 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
HIF3AQ9Y2N7 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HIF3AQ9Y2N7 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HIF3AQ9Y2N7 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
HIF3AQ9Y2N7 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HIF3AQ9Y2N7 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
HIF3AQ9Y2N7 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 BANP-204ENST00000393208 2283 ntTSL 2 BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 GCK-209ENST00000616242 2260 ntTSL 5 BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 AL353732.1-201ENST00000569618 1459 ntBASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 AC073648.2-201ENST00000510116 352 ntBASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 OR7E14P-202ENST00000530490 1290 ntBASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 AC107918.2-201ENST00000530817 355 ntBASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 HARS-204ENST00000438307 1789 ntTSL 2 BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 MTHFR-217ENST00000641820 1569 ntBASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 AL671710.1-201ENST00000610245 2349 ntBASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HIF3AQ9Y2N7 AL391005.1-201ENST00000623953 2435 ntBASIC15.09■□□□□ 0.01
HIF3AQ9Y2N7 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HIF3AQ9Y2N7 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC15.09■□□□□ 0.01
HIF3AQ9Y2N7 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
HIF3AQ9Y2N7 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HIF3AQ9Y2N7 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HIF3AQ9Y2N7 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
HIF3AQ9Y2N7 AL512652.2-201ENST00000625156 1716 ntBASIC15.09■□□□□ 0.01
HIF3AQ9Y2N7 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HIF3AQ9Y2N7 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
HIF3AQ9Y2N7 PC-214ENST00000628663 1470 ntTSL 5 BASIC15.09■□□□□ 0.01
HIF3AQ9Y2N7 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
HIF3AQ9Y2N7 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC15.09■□□□□ 0.01
HIF3AQ9Y2N7 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC15.09■□□□□ 0.01
HIF3AQ9Y2N7 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HIF3AQ9Y2N7 AC092364.2-201ENST00000596710 2692 ntBASIC15.09■□□□□ 0.01
HIF3AQ9Y2N7 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HIF3AQ9Y2N7 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
HIF3AQ9Y2N7 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
HIF3AQ9Y2N7 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
HIF3AQ9Y2N7 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
HIF3AQ9Y2N7 RPS2P1-201ENST00000434010 821 ntBASIC15.09■□□□□ 0.01
HIF3AQ9Y2N7 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms