Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 WDR53-204ENST00000433160 887 ntTSL 5 BASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 OR7E14P-202ENST00000530490 1290 ntBASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 METTL23-204ENST00000586752 904 ntTSL 2 BASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 CLEC4GP1-201ENST00000596555 870 ntBASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 GPAA1P2-202ENST00000606848 1787 ntBASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
LIMCH1Q9UPQ0 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 ABR-203ENST00000536794 2213 ntTSL 2 BASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 AL365203.3-201ENST00000609742 2057 ntBASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 DUSP5P1-201ENST00000441325 1139 ntBASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 AC136632.2-201ENST00000512891 861 ntBASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 AC087641.1-201ENST00000557561 1021 ntBASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 ETFA-208ENST00000559602 792 ntTSL 3 BASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 AC005412.3-201ENST00000580309 715 ntBASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 AC008667.4-201ENST00000607370 168 ntBASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMCH1Q9UPQ0 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 RNPS1P1-201ENST00000507437 918 ntBASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 UNC93B7-201ENST00000509439 705 ntBASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 BMF-207ENST00000559701 630 ntTSL 3 BASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 AC008894.3-201ENST00000624324 3103 ntBASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC19.67■□□□□ 0.74
LIMCH1Q9UPQ0 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms