Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
CCDC42Q96M95 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC42Q96M95 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC42Q96M95 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC42Q96M95 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC42Q96M95 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC18.09■□□□□ 0.49
CCDC42Q96M95 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC18.09■□□□□ 0.49
CCDC42Q96M95 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC18.09■□□□□ 0.49
CCDC42Q96M95 GGT3P-204ENST00000453783 1664 ntBASIC18.09■□□□□ 0.49
CCDC42Q96M95 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC42Q96M95 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC18.09■□□□□ 0.49
CCDC42Q96M95 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CCDC42Q96M95 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC18.08■□□□□ 0.49
CCDC42Q96M95 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC42Q96M95 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC42Q96M95 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC42Q96M95 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.49
CCDC42Q96M95 TSPY26P-202ENST00000565928 3884 ntBASIC18.08■□□□□ 0.49
CCDC42Q96M95 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC42Q96M95 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC42Q96M95 AL596087.1-201ENST00000400979 1969 ntBASIC18.08■□□□□ 0.49
CCDC42Q96M95 IER3-202ENST00000376377 1350 ntBASIC18.08■□□□□ 0.49
CCDC42Q96M95 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC18.08■□□□□ 0.49
CCDC42Q96M95 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC42Q96M95 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC42Q96M95 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC18.08■□□□□ 0.49
CCDC42Q96M95 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC18.08■□□□□ 0.49
CCDC42Q96M95 AL671710.1-201ENST00000610245 2349 ntBASIC18.08■□□□□ 0.48
CCDC42Q96M95 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC42Q96M95 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC42Q96M95 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
CCDC42Q96M95 PRYP5-201ENST00000451909 266 ntBASIC18.08■□□□□ 0.48
CCDC42Q96M95 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.08■□□□□ 0.48
CCDC42Q96M95 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.08■□□□□ 0.48
CCDC42Q96M95 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC18.08■□□□□ 0.48
CCDC42Q96M95 AC099336.1-202ENST00000602961 463 ntBASIC18.08■□□□□ 0.48
CCDC42Q96M95 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC42Q96M95 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC18.08■□□□□ 0.48
CCDC42Q96M95 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC42Q96M95 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
CCDC42Q96M95 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC42Q96M95 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC18.08■□□□□ 0.48
CCDC42Q96M95 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC18.08■□□□□ 0.48
CCDC42Q96M95 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC18.08■□□□□ 0.48
CCDC42Q96M95 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC42Q96M95 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC18.08■□□□□ 0.48
CCDC42Q96M95 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC18.08■□□□□ 0.48
CCDC42Q96M95 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC42Q96M95 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC42Q96M95 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC18.08■□□□□ 0.48
CCDC42Q96M95 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC42Q96M95 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
CCDC42Q96M95 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC42Q96M95 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC42Q96M95 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC42Q96M95 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC42Q96M95 TOP3BP1-201ENST00000420768 1380 ntBASIC18.07■□□□□ 0.48
CCDC42Q96M95 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC42Q96M95 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC42Q96M95 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC42Q96M95 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC18.07■□□□□ 0.48
CCDC42Q96M95 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC42Q96M95 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
CCDC42Q96M95 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC42Q96M95 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC42Q96M95 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC18.07■□□□□ 0.48
CCDC42Q96M95 AC012615.1-201ENST00000565797 1299 ntBASIC18.07■□□□□ 0.48
CCDC42Q96M95 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC18.07■□□□□ 0.48
CCDC42Q96M95 MIR3180-1-201ENST00000580374 94 ntBASIC18.07■□□□□ 0.48
CCDC42Q96M95 MIR3180-3-201ENST00000584616 94 ntBASIC18.07■□□□□ 0.48
CCDC42Q96M95 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC42Q96M95 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC18.07■□□□□ 0.48
CCDC42Q96M95 DBP-204ENST00000599385 709 ntTSL 3 BASIC18.07■□□□□ 0.48
CCDC42Q96M95 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC42Q96M95 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC18.07■□□□□ 0.48
CCDC42Q96M95 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC42Q96M95 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC18.07■□□□□ 0.48
CCDC42Q96M95 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC42Q96M95 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC42Q96M95 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC42Q96M95 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC42Q96M95 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC42Q96M95 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC42Q96M95 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC18.06■□□□□ 0.48
CCDC42Q96M95 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC42Q96M95 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC18.06■□□□□ 0.48
CCDC42Q96M95 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC42Q96M95 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC42Q96M95 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC42Q96M95 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC42Q96M95 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC18.06■□□□□ 0.48
CCDC42Q96M95 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC42Q96M95 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CCDC42Q96M95 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CCDC42Q96M95 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC42Q96M95 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC42Q96M95 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC42Q96M95 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC42Q96M95 MED16-201ENST00000269814 1199 ntTSL 5 BASIC18.06■□□□□ 0.48
CCDC42Q96M95 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms