Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LRCH3Q96II8 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
LRCH3Q96II8 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18■□□□□ 0.47
LRCH3Q96II8 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC17.99■□□□□ 0.47
LRCH3Q96II8 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
LRCH3Q96II8 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC17.99■□□□□ 0.47
LRCH3Q96II8 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
LRCH3Q96II8 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
LRCH3Q96II8 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.99■□□□□ 0.47
LRCH3Q96II8 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
LRCH3Q96II8 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LRCH3Q96II8 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
LRCH3Q96II8 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
LRCH3Q96II8 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
LRCH3Q96II8 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.99■□□□□ 0.47
LRCH3Q96II8 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LRCH3Q96II8 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LRCH3Q96II8 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
LRCH3Q96II8 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
LRCH3Q96II8 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
LRCH3Q96II8 AL080243.2-201ENST00000418783 582 ntBASIC17.99■□□□□ 0.47
LRCH3Q96II8 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC17.99■□□□□ 0.47
LRCH3Q96II8 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC17.99■□□□□ 0.47
LRCH3Q96II8 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC17.99■□□□□ 0.47
LRCH3Q96II8 KLF2P4-201ENST00000451959 1225 ntBASIC17.99■□□□□ 0.47
LRCH3Q96II8 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
LRCH3Q96II8 PFN1P12-201ENST00000455938 534 ntBASIC17.99■□□□□ 0.47
LRCH3Q96II8 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC17.99■□□□□ 0.47
LRCH3Q96II8 RNA5SP412-201ENST00000516234 123 ntBASIC17.99■□□□□ 0.47
LRCH3Q96II8 AC105233.2-201ENST00000523697 349 ntBASIC17.99■□□□□ 0.47
LRCH3Q96II8 AF228730.5-201ENST00000530288 346 ntBASIC17.99■□□□□ 0.47
LRCH3Q96II8 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC17.99■□□□□ 0.47
LRCH3Q96II8 TPRX2P-201ENST00000535362 881 ntBASIC17.99■□□□□ 0.47
LRCH3Q96II8 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC17.99■□□□□ 0.47
LRCH3Q96II8 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
LRCH3Q96II8 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.99■□□□□ 0.47
LRCH3Q96II8 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC17.99■□□□□ 0.47
LRCH3Q96II8 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LRCH3Q96II8 AC018665.1-201ENST00000622927 1362 ntBASIC17.99■□□□□ 0.47
LRCH3Q96II8 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LRCH3Q96II8 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
LRCH3Q96II8 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
LRCH3Q96II8 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LRCH3Q96II8 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
LRCH3Q96II8 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
LRCH3Q96II8 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LRCH3Q96II8 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
LRCH3Q96II8 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
LRCH3Q96II8 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LRCH3Q96II8 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.98■□□□□ 0.47
LRCH3Q96II8 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LRCH3Q96II8 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.98■□□□□ 0.47
LRCH3Q96II8 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LRCH3Q96II8 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LRCH3Q96II8 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
LRCH3Q96II8 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.98■□□□□ 0.47
LRCH3Q96II8 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LRCH3Q96II8 RPS19-201ENST00000221975 500 ntTSL 3 BASIC17.98■□□□□ 0.47
LRCH3Q96II8 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LRCH3Q96II8 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LRCH3Q96II8 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
LRCH3Q96II8 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LRCH3Q96II8 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LRCH3Q96II8 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LRCH3Q96II8 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC17.98■□□□□ 0.47
LRCH3Q96II8 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC17.98■□□□□ 0.47
LRCH3Q96II8 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC17.98■□□□□ 0.47
LRCH3Q96II8 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC17.98■□□□□ 0.47
LRCH3Q96II8 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC17.98■□□□□ 0.47
LRCH3Q96II8 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC17.98■□□□□ 0.47
LRCH3Q96II8 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC17.98■□□□□ 0.47
LRCH3Q96II8 MBP-227ENST00000526111 581 ntTSL 4 BASIC17.98■□□□□ 0.47
LRCH3Q96II8 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC17.98■□□□□ 0.47
LRCH3Q96II8 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.98■□□□□ 0.47
LRCH3Q96II8 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
LRCH3Q96II8 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LRCH3Q96II8 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.98■□□□□ 0.47
LRCH3Q96II8 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC17.98■□□□□ 0.47
LRCH3Q96II8 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LRCH3Q96II8 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LRCH3Q96II8 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.98■□□□□ 0.47
LRCH3Q96II8 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.98■□□□□ 0.47
LRCH3Q96II8 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.98■□□□□ 0.47
LRCH3Q96II8 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
LRCH3Q96II8 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LRCH3Q96II8 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LRCH3Q96II8 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.97■□□□□ 0.47
LRCH3Q96II8 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LRCH3Q96II8 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.97■□□□□ 0.47
LRCH3Q96II8 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC17.97■□□□□ 0.47
LRCH3Q96II8 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.97■□□□□ 0.47
LRCH3Q96II8 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LRCH3Q96II8 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LRCH3Q96II8 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LRCH3Q96II8 PP14571-201ENST00000404327 934 ntTSL 2 BASIC17.97■□□□□ 0.47
LRCH3Q96II8 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LRCH3Q96II8 USP32P1-208ENST00000506594 1164 ntBASIC17.97■□□□□ 0.47
LRCH3Q96II8 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC17.97■□□□□ 0.47
LRCH3Q96II8 AC023310.3-201ENST00000557027 670 ntBASIC17.97■□□□□ 0.47
LRCH3Q96II8 AC100756.1-201ENST00000562736 682 ntBASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms