Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 CD99-202ENST00000381180 530 ntTSL 2 BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 AC002056.1-201ENST00000395613 760 ntBASIC17.11■□□□□ 0.33
RTL3Q8N8U3 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 AC112191.1-201ENST00000523689 701 ntBASIC17.11■□□□□ 0.33
RTL3Q8N8U3 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 CALM1-205ENST00000553542 877 ntTSL 5 BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 AC091812.2-201ENST00000619081 385 ntBASIC17.11■□□□□ 0.33
RTL3Q8N8U3 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTL3Q8N8U3 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.1■□□□□ 0.33
RTL3Q8N8U3 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 FAM58CP-201ENST00000435741 640 ntBASIC17.1■□□□□ 0.33
RTL3Q8N8U3 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 DNAJB3-201ENST00000446806 729 ntBASIC17.1■□□□□ 0.33
RTL3Q8N8U3 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 C20orf181-201ENST00000623918 480 ntBASIC17.1■□□□□ 0.33
RTL3Q8N8U3 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC17.1■□□□□ 0.33
RTL3Q8N8U3 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 GGT3P-204ENST00000453783 1664 ntBASIC17.1■□□□□ 0.33
RTL3Q8N8U3 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 GPAA1P2-202ENST00000606848 1787 ntBASIC17.1■□□□□ 0.33
RTL3Q8N8U3 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTL3Q8N8U3 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms