Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
VPS13CQ709C8 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC13.72□□□□□ -0.21
VPS13CQ709C8 AC068587.10-201ENST00000641210 219 ntBASIC13.72□□□□□ -0.21
VPS13CQ709C8 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
VPS13CQ709C8 EML3-212ENST00000494176 2901 ntTSL 2 BASIC13.72□□□□□ -0.21
VPS13CQ709C8 EML3-216ENST00000529309 2909 ntTSL 2 BASIC13.72□□□□□ -0.21
VPS13CQ709C8 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
VPS13CQ709C8 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
VPS13CQ709C8 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC13.71□□□□□ -0.21
VPS13CQ709C8 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC13.71□□□□□ -0.21
VPS13CQ709C8 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
VPS13CQ709C8 ACTBP11-201ENST00000436287 1126 ntBASIC13.71□□□□□ -0.21
VPS13CQ709C8 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
VPS13CQ709C8 AC243960.2-201ENST00000600996 747 ntBASIC13.71□□□□□ -0.21
VPS13CQ709C8 PDIA3P1-201ENST00000471856 1510 ntBASIC13.71□□□□□ -0.21
VPS13CQ709C8 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
VPS13CQ709C8 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
VPS13CQ709C8 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
VPS13CQ709C8 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
VPS13CQ709C8 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC13.71□□□□□ -0.21
VPS13CQ709C8 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC13.71□□□□□ -0.21
VPS13CQ709C8 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
VPS13CQ709C8 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
VPS13CQ709C8 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.21
VPS13CQ709C8 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC13.71□□□□□ -0.21
VPS13CQ709C8 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
VPS13CQ709C8 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC13.71□□□□□ -0.21
VPS13CQ709C8 AL391069.4-201ENST00000609583 481 ntBASIC13.71□□□□□ -0.21
VPS13CQ709C8 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
VPS13CQ709C8 AL035456.1-201ENST00000456064 1369 ntBASIC13.71□□□□□ -0.22
VPS13CQ709C8 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
VPS13CQ709C8 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
VPS13CQ709C8 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
VPS13CQ709C8 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
VPS13CQ709C8 LINC02199-201ENST00000506655 2702 ntBASIC13.71□□□□□ -0.22
VPS13CQ709C8 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
VPS13CQ709C8 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC13.71□□□□□ -0.22
VPS13CQ709C8 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC13.71□□□□□ -0.22
VPS13CQ709C8 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC13.71□□□□□ -0.22
VPS13CQ709C8 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC13.71□□□□□ -0.22
VPS13CQ709C8 AL512361.1-201ENST00000554200 418 ntBASIC13.71□□□□□ -0.22
VPS13CQ709C8 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC13.71□□□□□ -0.22
VPS13CQ709C8 SNX1-214ENST00000625244 324 ntTSL 5 BASIC13.71□□□□□ -0.22
VPS13CQ709C8 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
VPS13CQ709C8 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC13.71□□□□□ -0.22
VPS13CQ709C8 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC13.7□□□□□ -0.22
VPS13CQ709C8 AC011676.5-201ENST00000624864 2660 ntBASIC13.7□□□□□ -0.22
VPS13CQ709C8 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
VPS13CQ709C8 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC13.7□□□□□ -0.22
VPS13CQ709C8 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC13.7□□□□□ -0.22
VPS13CQ709C8 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC13.7□□□□□ -0.22
VPS13CQ709C8 FLJ13224-201ENST00000313737 1514 ntBASIC13.7□□□□□ -0.22
VPS13CQ709C8 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
VPS13CQ709C8 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
VPS13CQ709C8 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC13.7□□□□□ -0.22
VPS13CQ709C8 AC099548.2-209ENST00000480264 625 ntBASIC13.7□□□□□ -0.22
VPS13CQ709C8 AC011495.1-201ENST00000498085 584 ntBASIC13.7□□□□□ -0.22
VPS13CQ709C8 RNA5SP412-201ENST00000516234 123 ntBASIC13.7□□□□□ -0.22
VPS13CQ709C8 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC13.7□□□□□ -0.22
VPS13CQ709C8 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC13.7□□□□□ -0.22
VPS13CQ709C8 AC093726.1-201ENST00000608064 963 ntBASIC13.7□□□□□ -0.22
VPS13CQ709C8 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC13.7□□□□□ -0.22
VPS13CQ709C8 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC13.7□□□□□ -0.22
VPS13CQ709C8 TOP3BP1-201ENST00000420768 1380 ntBASIC13.7□□□□□ -0.22
VPS13CQ709C8 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
VPS13CQ709C8 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
VPS13CQ709C8 AC005052.1-201ENST00000625181 2492 ntBASIC13.7□□□□□ -0.22
VPS13CQ709C8 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC13.7□□□□□ -0.22
VPS13CQ709C8 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC13.7□□□□□ -0.22
VPS13CQ709C8 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC13.7□□□□□ -0.22
VPS13CQ709C8 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC13.7□□□□□ -0.22
VPS13CQ709C8 RHOQP1-201ENST00000555758 579 ntBASIC13.7□□□□□ -0.22
VPS13CQ709C8 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC13.7□□□□□ -0.22
VPS13CQ709C8 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC13.7□□□□□ -0.22
VPS13CQ709C8 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC13.7□□□□□ -0.22
VPS13CQ709C8 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
VPS13CQ709C8 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
VPS13CQ709C8 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
VPS13CQ709C8 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
VPS13CQ709C8 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC13.7□□□□□ -0.22
VPS13CQ709C8 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC13.7□□□□□ -0.22
VPS13CQ709C8 RAD18-204ENST00000418463 563 ntTSL 4 BASIC13.7□□□□□ -0.22
VPS13CQ709C8 RAD18-205ENST00000421052 582 ntTSL 3 BASIC13.7□□□□□ -0.22
VPS13CQ709C8 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC13.7□□□□□ -0.22
VPS13CQ709C8 AC091167.2-201ENST00000579581 588 ntBASIC13.7□□□□□ -0.22
VPS13CQ709C8 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
VPS13CQ709C8 RHBDF1P1-201ENST00000427504 1941 ntBASIC13.7□□□□□ -0.22
VPS13CQ709C8 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC13.69□□□□□ -0.22
VPS13CQ709C8 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
VPS13CQ709C8 PC-204ENST00000524491 1714 ntTSL 2 BASIC13.69□□□□□ -0.22
VPS13CQ709C8 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13CQ709C8 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
VPS13CQ709C8 AC055876.2-201ENST00000531834 546 ntBASIC13.69□□□□□ -0.22
VPS13CQ709C8 TMEM261P1-201ENST00000604899 340 ntBASIC13.69□□□□□ -0.22
VPS13CQ709C8 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13CQ709C8 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13CQ709C8 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC13.69□□□□□ -0.22
VPS13CQ709C8 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13CQ709C8 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13CQ709C8 MSTO2P-201ENST00000314835 1709 ntBASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms