Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
KRT39Q6A163 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
KRT39Q6A163 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
KRT39Q6A163 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
KRT39Q6A163 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
KRT39Q6A163 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.03■□□□□ 0.48
KRT39Q6A163 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
KRT39Q6A163 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC18.03■□□□□ 0.48
KRT39Q6A163 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
KRT39Q6A163 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC18.03■□□□□ 0.48
KRT39Q6A163 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
KRT39Q6A163 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
KRT39Q6A163 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC18.02■□□□□ 0.48
KRT39Q6A163 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC18.02■□□□□ 0.48
KRT39Q6A163 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
KRT39Q6A163 BCAR1-209ENST00000546196 1340 ntBASIC18.02■□□□□ 0.48
KRT39Q6A163 GPAA1P2-202ENST00000606848 1787 ntBASIC18.02■□□□□ 0.48
KRT39Q6A163 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC18.02■□□□□ 0.48
KRT39Q6A163 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.48
KRT39Q6A163 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC18.02■□□□□ 0.48
KRT39Q6A163 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
KRT39Q6A163 FALEC-201ENST00000416894 566 ntTSL 3 BASIC18.02■□□□□ 0.48
KRT39Q6A163 MED15P5-201ENST00000423150 992 ntBASIC18.02■□□□□ 0.48
KRT39Q6A163 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
KRT39Q6A163 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC18.02■□□□□ 0.48
KRT39Q6A163 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC18.02■□□□□ 0.48
KRT39Q6A163 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
KRT39Q6A163 RNA5SP416-201ENST00000516838 111 ntBASIC18.02■□□□□ 0.48
KRT39Q6A163 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC18.02■□□□□ 0.48
KRT39Q6A163 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC18.02■□□□□ 0.48
KRT39Q6A163 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC18.02■□□□□ 0.48
KRT39Q6A163 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC18.02■□□□□ 0.48
KRT39Q6A163 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC18.02■□□□□ 0.48
KRT39Q6A163 AL031055.1-201ENST00000606362 631 ntBASIC18.02■□□□□ 0.48
KRT39Q6A163 AC025580.3-201ENST00000617932 1424 ntBASIC18.02■□□□□ 0.48
KRT39Q6A163 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
KRT39Q6A163 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
KRT39Q6A163 ME2P1-201ENST00000426028 1970 ntBASIC18.02■□□□□ 0.47
KRT39Q6A163 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
KRT39Q6A163 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC18.02■□□□□ 0.47
KRT39Q6A163 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
KRT39Q6A163 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
KRT39Q6A163 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
KRT39Q6A163 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
KRT39Q6A163 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
KRT39Q6A163 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
KRT39Q6A163 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
KRT39Q6A163 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
KRT39Q6A163 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
KRT39Q6A163 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
KRT39Q6A163 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
KRT39Q6A163 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
KRT39Q6A163 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC18.01■□□□□ 0.47
KRT39Q6A163 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
KRT39Q6A163 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
KRT39Q6A163 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
KRT39Q6A163 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
KRT39Q6A163 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
KRT39Q6A163 PMS2P4-201ENST00000412466 1052 ntBASIC18.01■□□□□ 0.47
KRT39Q6A163 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC18.01■□□□□ 0.47
KRT39Q6A163 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC18.01■□□□□ 0.47
KRT39Q6A163 KRT18P3-201ENST00000451602 1288 ntBASIC18.01■□□□□ 0.47
KRT39Q6A163 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC18.01■□□□□ 0.47
KRT39Q6A163 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC18.01■□□□□ 0.47
KRT39Q6A163 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC18.01■□□□□ 0.47
KRT39Q6A163 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC18.01■□□□□ 0.47
KRT39Q6A163 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC18.01■□□□□ 0.47
KRT39Q6A163 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC18.01■□□□□ 0.47
KRT39Q6A163 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
KRT39Q6A163 KRT19P2-202ENST00000557173 1012 ntBASIC18.01■□□□□ 0.47
KRT39Q6A163 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC18.01■□□□□ 0.47
KRT39Q6A163 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
KRT39Q6A163 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC18.01■□□□□ 0.47
KRT39Q6A163 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC18.01■□□□□ 0.47
KRT39Q6A163 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC18.01■□□□□ 0.47
KRT39Q6A163 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
KRT39Q6A163 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
KRT39Q6A163 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC18.01■□□□□ 0.47
KRT39Q6A163 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
KRT39Q6A163 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
KRT39Q6A163 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
KRT39Q6A163 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
KRT39Q6A163 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC18.01■□□□□ 0.47
KRT39Q6A163 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC18.01■□□□□ 0.47
KRT39Q6A163 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC18.01■□□□□ 0.47
KRT39Q6A163 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
KRT39Q6A163 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC18.01■□□□□ 0.47
KRT39Q6A163 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC18.01■□□□□ 0.47
KRT39Q6A163 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
KRT39Q6A163 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
KRT39Q6A163 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
KRT39Q6A163 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
KRT39Q6A163 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
KRT39Q6A163 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC18■□□□□ 0.47
KRT39Q6A163 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC18■□□□□ 0.47
KRT39Q6A163 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC18■□□□□ 0.47
KRT39Q6A163 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
KRT39Q6A163 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
KRT39Q6A163 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC18■□□□□ 0.47
KRT39Q6A163 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms