Protein–RNA interactions for Protein: Q08945

SSRP1, FACT complex subunit SSRP1, humanhuman

Known RBP Predictions only

Length 709 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSRP1Q08945 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
SSRP1Q08945 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC19.37■□□□□ 0.69
SSRP1Q08945 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SSRP1Q08945 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SSRP1Q08945 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SSRP1Q08945 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SSRP1Q08945 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SSRP1Q08945 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SSRP1Q08945 BEX3-201ENST00000361298 921 ntTSL 2 BASIC19.37■□□□□ 0.69
SSRP1Q08945 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC19.37■□□□□ 0.69
SSRP1Q08945 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
SSRP1Q08945 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC19.37■□□□□ 0.69
SSRP1Q08945 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC19.37■□□□□ 0.69
SSRP1Q08945 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC19.37■□□□□ 0.69
SSRP1Q08945 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC19.37■□□□□ 0.69
SSRP1Q08945 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
SSRP1Q08945 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC19.37■□□□□ 0.69
SSRP1Q08945 AC023141.13-201ENST00000604991 943 ntBASIC19.37■□□□□ 0.69
SSRP1Q08945 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC19.37■□□□□ 0.69
SSRP1Q08945 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC19.37■□□□□ 0.69
SSRP1Q08945 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SSRP1Q08945 CES3-203ENST00000543856 3178 ntTSL 2 BASIC19.37■□□□□ 0.69
SSRP1Q08945 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC19.37■□□□□ 0.69
SSRP1Q08945 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SSRP1Q08945 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
SSRP1Q08945 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
SSRP1Q08945 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
SSRP1Q08945 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SSRP1Q08945 GGT3P-204ENST00000453783 1664 ntBASIC19.36■□□□□ 0.69
SSRP1Q08945 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC19.36■□□□□ 0.69
SSRP1Q08945 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SSRP1Q08945 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC19.36■□□□□ 0.69
SSRP1Q08945 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
SSRP1Q08945 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC19.36■□□□□ 0.69
SSRP1Q08945 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SSRP1Q08945 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SSRP1Q08945 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SSRP1Q08945 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC19.36■□□□□ 0.69
SSRP1Q08945 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SSRP1Q08945 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SSRP1Q08945 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC19.36■□□□□ 0.69
SSRP1Q08945 HS6ST1P1-201ENST00000481504 1234 ntBASIC19.36■□□□□ 0.69
SSRP1Q08945 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC19.36■□□□□ 0.69
SSRP1Q08945 MAL2-202ENST00000531508 892 ntTSL 3 BASIC19.36■□□□□ 0.69
SSRP1Q08945 RPL28-209ENST00000560055 670 ntTSL 3 BASIC19.36■□□□□ 0.69
SSRP1Q08945 PIN1-206ENST00000587625 878 ntTSL 2 BASIC19.36■□□□□ 0.69
SSRP1Q08945 AC004877.2-201ENST00000623941 599 ntBASIC19.36■□□□□ 0.69
SSRP1Q08945 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
SSRP1Q08945 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC19.36■□□□□ 0.69
SSRP1Q08945 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
SSRP1Q08945 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SSRP1Q08945 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SSRP1Q08945 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SSRP1Q08945 GGT4P-201ENST00000623672 1708 ntBASIC19.36■□□□□ 0.69
SSRP1Q08945 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SSRP1Q08945 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SSRP1Q08945 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC19.36■□□□□ 0.69
SSRP1Q08945 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SSRP1Q08945 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC19.36■□□□□ 0.69
SSRP1Q08945 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SSRP1Q08945 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC19.35■□□□□ 0.69
SSRP1Q08945 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
SSRP1Q08945 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SSRP1Q08945 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SSRP1Q08945 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SSRP1Q08945 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
SSRP1Q08945 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SSRP1Q08945 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SSRP1Q08945 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC19.35■□□□□ 0.69
SSRP1Q08945 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SSRP1Q08945 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SSRP1Q08945 BCAR1-209ENST00000546196 1340 ntBASIC19.35■□□□□ 0.69
SSRP1Q08945 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC19.35■□□□□ 0.69
SSRP1Q08945 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SSRP1Q08945 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SSRP1Q08945 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SSRP1Q08945 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
SSRP1Q08945 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC19.35■□□□□ 0.69
SSRP1Q08945 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC19.35■□□□□ 0.69
SSRP1Q08945 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SSRP1Q08945 RNU1-129P-201ENST00000384064 167 ntBASIC19.35■□□□□ 0.69
SSRP1Q08945 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SSRP1Q08945 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC19.35■□□□□ 0.69
SSRP1Q08945 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC19.35■□□□□ 0.69
SSRP1Q08945 U1.21-201ENST00000580816 167 ntBASIC19.35■□□□□ 0.69
SSRP1Q08945 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SSRP1Q08945 CAND2-206ENST00000626378 333 ntTSL 5 BASIC19.35■□□□□ 0.69
SSRP1Q08945 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC19.35■□□□□ 0.69
SSRP1Q08945 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SSRP1Q08945 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SSRP1Q08945 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC19.35■□□□□ 0.69
SSRP1Q08945 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC19.35■□□□□ 0.69
SSRP1Q08945 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
SSRP1Q08945 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SSRP1Q08945 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
SSRP1Q08945 PCDHB19P-201ENST00000570871 2371 ntBASIC19.35■□□□□ 0.69
SSRP1Q08945 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC19.35■□□□□ 0.69
SSRP1Q08945 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SSRP1Q08945 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
SSRP1Q08945 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms