Protein–RNA interactions for Protein: P62987

UBA52, Ubiquitin-60S ribosomal protein L40, humanhuman

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBA52P62987 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC14.51□□□□□ -0.09
UBA52P62987 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
UBA52P62987 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
UBA52P62987 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC14.51□□□□□ -0.09
UBA52P62987 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC14.51□□□□□ -0.09
UBA52P62987 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
UBA52P62987 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
UBA52P62987 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
UBA52P62987 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
UBA52P62987 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
UBA52P62987 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
UBA52P62987 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
UBA52P62987 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
UBA52P62987 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
UBA52P62987 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
UBA52P62987 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
UBA52P62987 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
UBA52P62987 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
UBA52P62987 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
UBA52P62987 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
UBA52P62987 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
UBA52P62987 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
UBA52P62987 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC14.5□□□□□ -0.09
UBA52P62987 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
UBA52P62987 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
UBA52P62987 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC14.5□□□□□ -0.09
UBA52P62987 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
UBA52P62987 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
UBA52P62987 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
UBA52P62987 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC14.5□□□□□ -0.09
UBA52P62987 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
UBA52P62987 PMS2P7-201ENST00000506558 1336 ntBASIC14.5□□□□□ -0.09
UBA52P62987 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
UBA52P62987 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
UBA52P62987 AC116353.5-201ENST00000638148 1699 ntBASIC14.5□□□□□ -0.09
UBA52P62987 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
UBA52P62987 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
UBA52P62987 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC14.5□□□□□ -0.09
UBA52P62987 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
UBA52P62987 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
UBA52P62987 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
UBA52P62987 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC14.5□□□□□ -0.09
UBA52P62987 RBM17P3-201ENST00000417687 1192 ntBASIC14.5□□□□□ -0.09
UBA52P62987 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
UBA52P62987 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
UBA52P62987 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
UBA52P62987 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC14.5□□□□□ -0.09
UBA52P62987 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
UBA52P62987 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC14.5□□□□□ -0.09
UBA52P62987 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
UBA52P62987 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC14.5□□□□□ -0.09
UBA52P62987 FAM215A-202ENST00000632077 792 ntBASIC14.5□□□□□ -0.09
UBA52P62987 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
UBA52P62987 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
UBA52P62987 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
UBA52P62987 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
UBA52P62987 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC14.5□□□□□ -0.09
UBA52P62987 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
UBA52P62987 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC14.5□□□□□ -0.09
UBA52P62987 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
UBA52P62987 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
UBA52P62987 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC14.5□□□□□ -0.09
UBA52P62987 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
UBA52P62987 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
UBA52P62987 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
UBA52P62987 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC14.5□□□□□ -0.09
UBA52P62987 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
UBA52P62987 TP73-AS1-210ENST00000637775 1455 ntBASIC14.5□□□□□ -0.09
UBA52P62987 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
UBA52P62987 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
UBA52P62987 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
UBA52P62987 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
UBA52P62987 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
UBA52P62987 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.49□□□□□ -0.09
UBA52P62987 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
UBA52P62987 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
UBA52P62987 ZNF259P1-201ENST00000407656 1365 ntBASIC14.49□□□□□ -0.09
UBA52P62987 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
UBA52P62987 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC14.49□□□□□ -0.09
UBA52P62987 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
UBA52P62987 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
UBA52P62987 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
UBA52P62987 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC14.49□□□□□ -0.09
UBA52P62987 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC14.49□□□□□ -0.09
UBA52P62987 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
UBA52P62987 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
UBA52P62987 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
UBA52P62987 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
UBA52P62987 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
UBA52P62987 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
UBA52P62987 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
UBA52P62987 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
UBA52P62987 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
UBA52P62987 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
UBA52P62987 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC14.49□□□□□ -0.09
UBA52P62987 MIR149-201ENST00000384879 89 ntBASIC14.49□□□□□ -0.09
UBA52P62987 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
UBA52P62987 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC14.49□□□□□ -0.09
UBA52P62987 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
UBA52P62987 FGFR3P6-201ENST00000457012 610 ntBASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms