Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SOX3P41225 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
SOX3P41225 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SOX3P41225 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC15.78■□□□□ 0.12
SOX3P41225 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
SOX3P41225 RHBDF1P1-201ENST00000427504 1941 ntBASIC15.78■□□□□ 0.12
SOX3P41225 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SOX3P41225 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
SOX3P41225 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
SOX3P41225 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC15.78■□□□□ 0.12
SOX3P41225 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC15.78■□□□□ 0.12
SOX3P41225 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC15.78■□□□□ 0.12
SOX3P41225 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
SOX3P41225 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
SOX3P41225 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SOX3P41225 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SOX3P41225 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SOX3P41225 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SOX3P41225 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.12
SOX3P41225 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC15.77■□□□□ 0.12
SOX3P41225 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
SOX3P41225 AC092171.3-201ENST00000610122 2651 ntBASIC15.77■□□□□ 0.12
SOX3P41225 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SOX3P41225 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
SOX3P41225 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC15.77■□□□□ 0.12
SOX3P41225 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC15.77■□□□□ 0.12
SOX3P41225 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
SOX3P41225 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SOX3P41225 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
SOX3P41225 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SOX3P41225 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
SOX3P41225 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
SOX3P41225 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
SOX3P41225 RPP21-221ENST00000428040 594 ntTSL 2 BASIC15.77■□□□□ 0.12
SOX3P41225 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SOX3P41225 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC15.77■□□□□ 0.12
SOX3P41225 KRT18P2-201ENST00000447938 1258 ntBASIC15.77■□□□□ 0.12
SOX3P41225 HCG4B-203ENST00000450128 991 ntBASIC15.77■□□□□ 0.12
SOX3P41225 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC15.77■□□□□ 0.12
SOX3P41225 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC15.77■□□□□ 0.12
SOX3P41225 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC15.77■□□□□ 0.12
SOX3P41225 OR7E47P-204ENST00000575924 449 ntBASIC15.77■□□□□ 0.12
SOX3P41225 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SOX3P41225 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC15.77■□□□□ 0.12
SOX3P41225 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC15.77■□□□□ 0.11
SOX3P41225 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SOX3P41225 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
SOX3P41225 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
SOX3P41225 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SOX3P41225 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SOX3P41225 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC15.77■□□□□ 0.11
SOX3P41225 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SOX3P41225 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
SOX3P41225 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
SOX3P41225 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
SOX3P41225 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC15.77■□□□□ 0.11
SOX3P41225 AC093525.9-201ENST00000624961 1746 ntBASIC15.77■□□□□ 0.11
SOX3P41225 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
SOX3P41225 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
SOX3P41225 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SOX3P41225 AC116353.5-201ENST00000638148 1699 ntBASIC15.76■□□□□ 0.11
SOX3P41225 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
SOX3P41225 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SOX3P41225 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC15.76■□□□□ 0.11
SOX3P41225 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
SOX3P41225 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
SOX3P41225 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SOX3P41225 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
SOX3P41225 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
SOX3P41225 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SOX3P41225 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
SOX3P41225 ATP6V0CP3-201ENST00000417255 467 ntBASIC15.76■□□□□ 0.11
SOX3P41225 PAWRP1-201ENST00000451083 565 ntBASIC15.76■□□□□ 0.11
SOX3P41225 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC15.76■□□□□ 0.11
SOX3P41225 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC15.76■□□□□ 0.11
SOX3P41225 AC018845.2-201ENST00000568326 409 ntBASIC15.76■□□□□ 0.11
SOX3P41225 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SOX3P41225 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC15.76■□□□□ 0.11
SOX3P41225 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC15.76■□□□□ 0.11
SOX3P41225 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SOX3P41225 AC132872.4-202ENST00000622924 2756 ntBASIC15.76■□□□□ 0.11
SOX3P41225 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SOX3P41225 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SOX3P41225 HNRNPRP1-201ENST00000453465 1695 ntBASIC15.76■□□□□ 0.11
SOX3P41225 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC15.76■□□□□ 0.11
SOX3P41225 HYMAI-201ENST00000635591 3347 ntBASIC15.76■□□□□ 0.11
SOX3P41225 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC15.76■□□□□ 0.11
SOX3P41225 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SOX3P41225 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SOX3P41225 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SOX3P41225 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX3P41225 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX3P41225 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC15.75■□□□□ 0.11
SOX3P41225 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX3P41225 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX3P41225 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
SOX3P41225 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX3P41225 EGFEM1P-202ENST00000431685 1563 ntBASIC15.75■□□□□ 0.11
SOX3P41225 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
SOX3P41225 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms