Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DMBP28068 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DMBP28068 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DMBP28068 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
HLA-DMBP28068 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DMBP28068 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DMBP28068 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC12.8□□□□□ -0.36
HLA-DMBP28068 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DMBP28068 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DMBP28068 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DMBP28068 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC12.8□□□□□ -0.36
HLA-DMBP28068 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DMBP28068 CYP2T1P-202ENST00000641596 2535 ntBASIC12.8□□□□□ -0.36
HLA-DMBP28068 BANP-204ENST00000393208 2283 ntTSL 2 BASIC12.8□□□□□ -0.36
HLA-DMBP28068 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC12.8□□□□□ -0.36
HLA-DMBP28068 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DMBP28068 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DMBP28068 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DMBP28068 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DMBP28068 AP002414.1-201ENST00000391405 1147 ntBASIC12.8□□□□□ -0.36
HLA-DMBP28068 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC12.8□□□□□ -0.36
HLA-DMBP28068 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DMBP28068 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
HLA-DMBP28068 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC12.8□□□□□ -0.36
HLA-DMBP28068 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC12.8□□□□□ -0.36
HLA-DMBP28068 AC064862.7-201ENST00000604520 867 ntBASIC12.8□□□□□ -0.36
HLA-DMBP28068 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC12.8□□□□□ -0.36
HLA-DMBP28068 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DMBP28068 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DMBP28068 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
HLA-DMBP28068 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
HLA-DMBP28068 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
HLA-DMBP28068 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC12.8□□□□□ -0.36
HLA-DMBP28068 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DMBP28068 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC12.8□□□□□ -0.36
HLA-DMBP28068 AL590787.1-201ENST00000568856 1315 ntBASIC12.8□□□□□ -0.36
HLA-DMBP28068 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DMBP28068 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC12.8□□□□□ -0.36
HLA-DMBP28068 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DMBP28068 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
HLA-DMBP28068 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DMBP28068 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DMBP28068 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DMBP28068 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DMBP28068 GID4-202ENST00000376345 1391 ntTSL 3 BASIC12.8□□□□□ -0.36
HLA-DMBP28068 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC12.8□□□□□ -0.36
HLA-DMBP28068 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HLA-DMBP28068 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
HLA-DMBP28068 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DMBP28068 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC12.79□□□□□ -0.36
HLA-DMBP28068 AP005117.1-201ENST00000584346 1413 ntBASIC12.79□□□□□ -0.36
HLA-DMBP28068 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DMBP28068 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC12.79□□□□□ -0.36
HLA-DMBP28068 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DMBP28068 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DMBP28068 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC12.79□□□□□ -0.36
HLA-DMBP28068 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
HLA-DMBP28068 PAUPAR-201ENST00000630360 2965 ntBASIC12.79□□□□□ -0.36
HLA-DMBP28068 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DMBP28068 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DMBP28068 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DMBP28068 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC12.79□□□□□ -0.36
HLA-DMBP28068 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC12.79□□□□□ -0.36
HLA-DMBP28068 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DMBP28068 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DMBP28068 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DMBP28068 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
HLA-DMBP28068 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC12.79□□□□□ -0.36
HLA-DMBP28068 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC12.79□□□□□ -0.36
HLA-DMBP28068 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC12.79□□□□□ -0.36
HLA-DMBP28068 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC12.79□□□□□ -0.36
HLA-DMBP28068 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC12.79□□□□□ -0.36
HLA-DMBP28068 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DMBP28068 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC12.79□□□□□ -0.36
HLA-DMBP28068 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DMBP28068 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC12.79□□□□□ -0.36
HLA-DMBP28068 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC12.79□□□□□ -0.36
HLA-DMBP28068 AC073592.4-201ENST00000623827 446 ntBASIC12.79□□□□□ -0.36
HLA-DMBP28068 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
HLA-DMBP28068 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC12.79□□□□□ -0.36
HLA-DMBP28068 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DMBP28068 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC12.79□□□□□ -0.36
HLA-DMBP28068 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC12.79□□□□□ -0.36
HLA-DMBP28068 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
HLA-DMBP28068 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DMBP28068 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DMBP28068 HYMAI-201ENST00000635591 3347 ntBASIC12.79□□□□□ -0.36
HLA-DMBP28068 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC12.79□□□□□ -0.36
HLA-DMBP28068 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
HLA-DMBP28068 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DMBP28068 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DMBP28068 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
HLA-DMBP28068 AL021920.2-201ENST00000624828 1351 ntBASIC12.79□□□□□ -0.36
HLA-DMBP28068 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DMBP28068 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DMBP28068 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DMBP28068 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DMBP28068 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DMBP28068 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HLA-DMBP28068 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms