Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC17.08■□□□□ 0.32
COL6A3P12111 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC17.08■□□□□ 0.32
COL6A3P12111 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC17.08■□□□□ 0.32
COL6A3P12111 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A3P12111 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC17.07■□□□□ 0.32
COL6A3P12111 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A3P12111 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
COL6A3P12111 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC17.07■□□□□ 0.32
COL6A3P12111 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
COL6A3P12111 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A3P12111 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC17.07■□□□□ 0.32
COL6A3P12111 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A3P12111 KRTAP10-13P-201ENST00000412914 571 ntBASIC17.07■□□□□ 0.32
COL6A3P12111 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC17.07■□□□□ 0.32
COL6A3P12111 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
COL6A3P12111 AC098859.1-201ENST00000502915 1238 ntBASIC17.07■□□□□ 0.32
COL6A3P12111 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC17.07■□□□□ 0.32
COL6A3P12111 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC17.07■□□□□ 0.32
COL6A3P12111 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC17.07■□□□□ 0.32
COL6A3P12111 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC17.07■□□□□ 0.32
COL6A3P12111 WT1-AS_6.1-201ENST00000614919 121 ntBASIC17.07■□□□□ 0.32
COL6A3P12111 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC17.07■□□□□ 0.32
COL6A3P12111 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A3P12111 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
COL6A3P12111 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A3P12111 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.07■□□□□ 0.32
COL6A3P12111 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.07■□□□□ 0.32
COL6A3P12111 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC17.07■□□□□ 0.32
COL6A3P12111 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
COL6A3P12111 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
COL6A3P12111 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC17.07■□□□□ 0.32
COL6A3P12111 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC17.07■□□□□ 0.32
COL6A3P12111 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC17.07■□□□□ 0.32
COL6A3P12111 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A3P12111 AC036164.1-201ENST00000570544 333 ntBASIC17.07■□□□□ 0.32
COL6A3P12111 AC091167.2-201ENST00000579581 588 ntBASIC17.07■□□□□ 0.32
COL6A3P12111 RN7SL596P-201ENST00000582123 288 ntBASIC17.07■□□□□ 0.32
COL6A3P12111 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC17.07■□□□□ 0.32
COL6A3P12111 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL6A3P12111 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A3P12111 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A3P12111 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A3P12111 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A3P12111 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A3P12111 AL512430.1-201ENST00000392575 860 ntBASIC17.06■□□□□ 0.32
COL6A3P12111 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A3P12111 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A3P12111 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC17.06■□□□□ 0.32
COL6A3P12111 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A3P12111 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A3P12111 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
COL6A3P12111 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A3P12111 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
COL6A3P12111 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A3P12111 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
COL6A3P12111 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A3P12111 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A3P12111 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A3P12111 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A3P12111 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A3P12111 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC17.06■□□□□ 0.32
COL6A3P12111 DEF8-202ENST00000418391 852 ntTSL 2 BASIC17.06■□□□□ 0.32
COL6A3P12111 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A3P12111 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC17.06■□□□□ 0.32
COL6A3P12111 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC17.06■□□□□ 0.32
COL6A3P12111 RN7SL181P-201ENST00000462921 277 ntBASIC17.06■□□□□ 0.32
COL6A3P12111 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC17.06■□□□□ 0.32
COL6A3P12111 PGAM1P5-201ENST00000548011 764 ntBASIC17.06■□□□□ 0.32
COL6A3P12111 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC17.06■□□□□ 0.32
COL6A3P12111 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A3P12111 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
COL6A3P12111 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC17.06■□□□□ 0.32
COL6A3P12111 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A3P12111 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC17.06■□□□□ 0.32
COL6A3P12111 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A3P12111 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A3P12111 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL6A3P12111 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.32
COL6A3P12111 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A3P12111 PFN2-202ENST00000423691 911 ntTSL 2 BASIC17.05■□□□□ 0.32
COL6A3P12111 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC17.05■□□□□ 0.32
COL6A3P12111 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC17.05■□□□□ 0.32
COL6A3P12111 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC17.05■□□□□ 0.32
COL6A3P12111 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A3P12111 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A3P12111 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC17.05■□□□□ 0.32
COL6A3P12111 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A3P12111 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
COL6A3P12111 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A3P12111 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC17.05■□□□□ 0.32
COL6A3P12111 SPDYE17-201ENST00000412399 783 ntBASIC17.05■□□□□ 0.32
COL6A3P12111 PARVG-202ENST00000415224 999 ntTSL 2 BASIC17.05■□□□□ 0.32
COL6A3P12111 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC17.05■□□□□ 0.32
COL6A3P12111 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC17.05■□□□□ 0.32
COL6A3P12111 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A3P12111 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A3P12111 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC17.05■□□□□ 0.32
COL6A3P12111 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
COL6A3P12111 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A3P12111 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms