Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 AC012317.2-201ENST00000623305 2251 ntBASIC23.08■■□□□ 1.28
NPHP4O75161 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC23.08■■□□□ 1.28
NPHP4O75161 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
NPHP4O75161 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.28
NPHP4O75161 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
NPHP4O75161 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC23.08■■□□□ 1.28
NPHP4O75161 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
NPHP4O75161 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.28
NPHP4O75161 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC23.08■■□□□ 1.28
NPHP4O75161 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC23.08■■□□□ 1.28
NPHP4O75161 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.28
NPHP4O75161 FXNP2-201ENST00000411625 547 ntBASIC23.08■■□□□ 1.28
NPHP4O75161 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC23.08■■□□□ 1.28
NPHP4O75161 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC23.08■■□□□ 1.28
NPHP4O75161 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
NPHP4O75161 AL355864.2-201ENST00000447420 863 ntBASIC23.08■■□□□ 1.28
NPHP4O75161 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC23.08■■□□□ 1.28
NPHP4O75161 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
NPHP4O75161 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC23.08■■□□□ 1.28
NPHP4O75161 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC23.08■■□□□ 1.28
NPHP4O75161 KRT90P-201ENST00000549264 1064 ntBASIC23.08■■□□□ 1.28
NPHP4O75161 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC23.08■■□□□ 1.28
NPHP4O75161 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.28
NPHP4O75161 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC23.08■■□□□ 1.28
NPHP4O75161 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC23.08■■□□□ 1.28
NPHP4O75161 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP4O75161 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC23.07■■□□□ 1.28
NPHP4O75161 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP4O75161 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
NPHP4O75161 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP4O75161 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
NPHP4O75161 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC23.07■■□□□ 1.28
NPHP4O75161 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC23.07■■□□□ 1.28
NPHP4O75161 Z97205.2-201ENST00000564697 1639 ntBASIC23.07■■□□□ 1.28
NPHP4O75161 AC090164.3-201ENST00000610780 2143 ntBASIC23.07■■□□□ 1.28
NPHP4O75161 ZBTB12BP-201ENST00000314232 1122 ntBASIC23.07■■□□□ 1.28
NPHP4O75161 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP4O75161 TPO-206ENST00000382269 1155 ntTSL 5 BASIC23.07■■□□□ 1.28
NPHP4O75161 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC23.07■■□□□ 1.28
NPHP4O75161 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP4O75161 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP4O75161 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC23.07■■□□□ 1.28
NPHP4O75161 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC23.07■■□□□ 1.28
NPHP4O75161 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC23.07■■□□□ 1.28
NPHP4O75161 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP4O75161 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
NPHP4O75161 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC23.07■■□□□ 1.28
NPHP4O75161 AC079316.1-201ENST00000548397 411 ntBASIC23.07■■□□□ 1.28
NPHP4O75161 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP4O75161 AC079328.1-201ENST00000560358 952 ntBASIC23.07■■□□□ 1.28
NPHP4O75161 NAT9-224ENST00000583757 583 ntTSL 3 BASIC23.07■■□□□ 1.28
NPHP4O75161 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP4O75161 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC23.06■■□□□ 1.28
NPHP4O75161 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP4O75161 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP4O75161 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP4O75161 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC23.06■■□□□ 1.28
NPHP4O75161 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
NPHP4O75161 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP4O75161 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP4O75161 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP4O75161 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP4O75161 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC23.06■■□□□ 1.28
NPHP4O75161 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC23.06■■□□□ 1.28
NPHP4O75161 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC23.06■■□□□ 1.28
NPHP4O75161 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC23.06■■□□□ 1.28
NPHP4O75161 AC015967.2-201ENST00000624092 234 ntBASIC23.06■■□□□ 1.28
NPHP4O75161 AC006435.4-201ENST00000625037 234 ntBASIC23.06■■□□□ 1.28
NPHP4O75161 SNX1-214ENST00000625244 324 ntTSL 5 BASIC23.06■■□□□ 1.28
NPHP4O75161 AL356737.1-201ENST00000634391 234 ntBASIC23.06■■□□□ 1.28
NPHP4O75161 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
NPHP4O75161 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP4O75161 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP4O75161 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP4O75161 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP4O75161 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC23.06■■□□□ 1.28
NPHP4O75161 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC23.05■■□□□ 1.28
NPHP4O75161 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
NPHP4O75161 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC23.05■■□□□ 1.28
NPHP4O75161 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
NPHP4O75161 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
NPHP4O75161 FO393414.2-201ENST00000405153 598 ntBASIC23.05■■□□□ 1.28
NPHP4O75161 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC23.05■■□□□ 1.28
NPHP4O75161 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC23.05■■□□□ 1.28
NPHP4O75161 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC23.05■■□□□ 1.28
NPHP4O75161 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC23.05■■□□□ 1.28
NPHP4O75161 AC244669.2-201ENST00000612320 853 ntBASIC23.05■■□□□ 1.28
NPHP4O75161 TUBB8P12-201ENST00000308911 1335 ntBASIC23.05■■□□□ 1.28
NPHP4O75161 TUBB7P-202ENST00000428444 1305 ntBASIC23.05■■□□□ 1.28
NPHP4O75161 TUBB8P7-204ENST00000567960 1332 ntBASIC23.05■■□□□ 1.28
NPHP4O75161 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC23.05■■□□□ 1.28
NPHP4O75161 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC23.05■■□□□ 1.28
NPHP4O75161 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
NPHP4O75161 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC23.05■■□□□ 1.28
NPHP4O75161 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
NPHP4O75161 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
NPHP4O75161 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC23.05■■□□□ 1.28
NPHP4O75161 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC23.05■■□□□ 1.28
NPHP4O75161 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
NPHP4O75161 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC23.04■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms