Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
PCDHGA1Q9Y5H4 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.02■□□□□ 0.15
PCDHGA1Q9Y5H4 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.02■□□□□ 0.15
PCDHGA1Q9Y5H4 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC16.02■□□□□ 0.15
PCDHGA1Q9Y5H4 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.02■□□□□ 0.15
PCDHGA1Q9Y5H4 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PCDHGA1Q9Y5H4 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
PCDHGA1Q9Y5H4 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
PCDHGA1Q9Y5H4 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PCDHGA1Q9Y5H4 BTBD7P1-201ENST00000447253 1453 ntBASIC16.02■□□□□ 0.15
PCDHGA1Q9Y5H4 AC138969.3-201ENST00000546612 1459 ntBASIC16.02■□□□□ 0.15
PCDHGA1Q9Y5H4 AC138932.2-201ENST00000548268 1459 ntBASIC16.02■□□□□ 0.15
PCDHGA1Q9Y5H4 AC126755.4-201ENST00000549796 1459 ntBASIC16.02■□□□□ 0.15
PCDHGA1Q9Y5H4 AC007541.1-201ENST00000570282 1469 ntBASIC16.02■□□□□ 0.15
PCDHGA1Q9Y5H4 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
PCDHGA1Q9Y5H4 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PCDHGA1Q9Y5H4 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PCDHGA1Q9Y5H4 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
PCDHGA1Q9Y5H4 KRT8P49-201ENST00000604166 1432 ntBASIC16.02■□□□□ 0.15
PCDHGA1Q9Y5H4 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PCDHGA1Q9Y5H4 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.15
PCDHGA1Q9Y5H4 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 AL391825.1-201ENST00000457671 1364 ntBASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 PRYP6-201ENST00000514804 343 ntBASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 IGHV3-71-201ENST00000523324 359 ntBASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 AL844908.2-201ENST00000609461 460 ntBASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 AC133963.1-201ENST00000504166 1679 ntBASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
PCDHGA1Q9Y5H4 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 NOC2LP2-201ENST00000407594 1944 ntBASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 AC087499.6-201ENST00000411576 835 ntBASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 DFFBP1-201ENST00000433250 979 ntBASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 ZNF890P-202ENST00000530367 1156 ntBASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 AL589739.1-201ENST00000607720 493 ntBASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 AC008738.7-201ENST00000609744 511 ntBASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16■□□□□ 0.15
PCDHGA1Q9Y5H4 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms