Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.28■□□□□ 0.2
VPS4AQ9UN37 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS4AQ9UN37 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.27■□□□□ 0.2
VPS4AQ9UN37 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.27■□□□□ 0.2
VPS4AQ9UN37 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS4AQ9UN37 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.27■□□□□ 0.2
VPS4AQ9UN37 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VPS4AQ9UN37 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS4AQ9UN37 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS4AQ9UN37 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.27■□□□□ 0.2
VPS4AQ9UN37 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
VPS4AQ9UN37 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
VPS4AQ9UN37 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VPS4AQ9UN37 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VPS4AQ9UN37 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS4AQ9UN37 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS4AQ9UN37 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS4AQ9UN37 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.27■□□□□ 0.2
VPS4AQ9UN37 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS4AQ9UN37 HTR5BP-201ENST00000430851 1154 ntBASIC16.27■□□□□ 0.2
VPS4AQ9UN37 METTL21AP1-201ENST00000438852 635 ntBASIC16.27■□□□□ 0.2
VPS4AQ9UN37 UNC93B6-202ENST00000528242 690 ntBASIC16.27■□□□□ 0.2
VPS4AQ9UN37 AC012640.2-201ENST00000561606 901 ntBASIC16.27■□□□□ 0.2
VPS4AQ9UN37 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.27■□□□□ 0.2
VPS4AQ9UN37 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.27■□□□□ 0.2
VPS4AQ9UN37 AL139288.1-201ENST00000623748 933 ntBASIC16.27■□□□□ 0.2
VPS4AQ9UN37 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS4AQ9UN37 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS4AQ9UN37 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS4AQ9UN37 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VPS4AQ9UN37 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
VPS4AQ9UN37 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.27■□□□□ 0.19
VPS4AQ9UN37 GPR89P-201ENST00000407924 1495 ntBASIC16.27■□□□□ 0.19
VPS4AQ9UN37 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.19
VPS4AQ9UN37 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VPS4AQ9UN37 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
VPS4AQ9UN37 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.19
VPS4AQ9UN37 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VPS4AQ9UN37 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VPS4AQ9UN37 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS4AQ9UN37 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
VPS4AQ9UN37 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VPS4AQ9UN37 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS4AQ9UN37 AC132938.5-201ENST00000624980 1813 ntBASIC16.26■□□□□ 0.19
VPS4AQ9UN37 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS4AQ9UN37 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
VPS4AQ9UN37 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS4AQ9UN37 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS4AQ9UN37 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VPS4AQ9UN37 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS4AQ9UN37 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS4AQ9UN37 AC023274.1-201ENST00000418278 595 ntBASIC16.26■□□□□ 0.19
VPS4AQ9UN37 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.26■□□□□ 0.19
VPS4AQ9UN37 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS4AQ9UN37 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
VPS4AQ9UN37 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC16.26■□□□□ 0.19
VPS4AQ9UN37 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC16.26■□□□□ 0.19
VPS4AQ9UN37 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC16.26■□□□□ 0.19
VPS4AQ9UN37 AC092364.2-202ENST00000597012 1073 ntBASIC16.26■□□□□ 0.19
VPS4AQ9UN37 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC16.26■□□□□ 0.19
VPS4AQ9UN37 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.26■□□□□ 0.19
VPS4AQ9UN37 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC16.26■□□□□ 0.19
VPS4AQ9UN37 AD001527.2-201ENST00000622994 785 ntBASIC16.26■□□□□ 0.19
VPS4AQ9UN37 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC16.26■□□□□ 0.19
VPS4AQ9UN37 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.26■□□□□ 0.19
VPS4AQ9UN37 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
VPS4AQ9UN37 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VPS4AQ9UN37 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS4AQ9UN37 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS4AQ9UN37 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VPS4AQ9UN37 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VPS4AQ9UN37 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS4AQ9UN37 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.25■□□□□ 0.19
VPS4AQ9UN37 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.25■□□□□ 0.19
VPS4AQ9UN37 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.25■□□□□ 0.19
VPS4AQ9UN37 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS4AQ9UN37 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VPS4AQ9UN37 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.25■□□□□ 0.19
VPS4AQ9UN37 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.25■□□□□ 0.19
VPS4AQ9UN37 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.25■□□□□ 0.19
VPS4AQ9UN37 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS4AQ9UN37 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VPS4AQ9UN37 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC16.25■□□□□ 0.19
VPS4AQ9UN37 CRCP-205ENST00000431089 942 ntTSL 2 BASIC16.25■□□□□ 0.19
VPS4AQ9UN37 AP006288.1-201ENST00000446065 395 ntBASIC16.25■□□□□ 0.19
VPS4AQ9UN37 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC16.25■□□□□ 0.19
VPS4AQ9UN37 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC16.25■□□□□ 0.19
VPS4AQ9UN37 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS4AQ9UN37 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC16.25■□□□□ 0.19
VPS4AQ9UN37 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VPS4AQ9UN37 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.25■□□□□ 0.19
VPS4AQ9UN37 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VPS4AQ9UN37 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.25■□□□□ 0.19
VPS4AQ9UN37 AC073592.5-201ENST00000624854 528 ntBASIC16.25■□□□□ 0.19
VPS4AQ9UN37 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.25■□□□□ 0.19
VPS4AQ9UN37 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.25■□□□□ 0.19
VPS4AQ9UN37 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms